Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0412 ATGGCTTCTTCTTCTCCTCCTCCTCCGTCACAATCTTATTCTTCTGCAACTCCTTCCTATCAATTCATCACTCATCTTCCCATTGCTCCTTCTTCTCCCAGTGAGAAGGTTGAAGAGGAGGAACCGCGAGTTCCGATTCATGTTGTGACGAAAGCGTCGCAACTACCTGTGGATTTTCTCGAACCTTCGCCGCACTCGAAAATCGTTATTGGTTTTGATTGTGAAGCTGTTGACTTGTGTCGCGATGGAGCTCTTTGCATAATCCAGCTTGCTTTTCCTGATGCTATATACCTGGTTGATGCAATTGAAGGGGGGAGTGTGCTTATCGAAGCCTGTAAGCCTGCACTTGAGTCTGATTATGTCACAAAAGTGATTCATGATTGCAAACGCGACAGTGAGGCATTGTACTTTCAGTTCGGCATCAAGTTAAACAATGTGGTGGATACCCAGATTGCTTACTCACTTCTAGAAGAGCAAGAAGGACAAAGGCGGTTGCCAGATGACTATATTTCACTTGTTGGTCTCCTAGCAGATCCACGTTATTGTGGCTTATCAAATGTTGACAAGGAAGAAGTCCGTGTCCTTCTTCGACAGGACCCCAATTTTTGGACTTACAGACCTTTATCTGAACAAATGATCCACTCTGCTGCTGATGATGTCCGTTTCCTTCTCTACATTTATCATCAAATGATGGCAAAGTTAACTGAACGGTCCTTATGGCTTCTTGCTGTTCGTGGTGCCTTGTACTGCCGGTGTTTCTGTGTGAACAATAATAATTATGCTGATTGGCCATCCCTACCTCCAATTCCAGATGAGCTGAAAGTTGATGGAAATGGTCCTGAGGAAGAAATTCTTTCAGTTCTTGATGTTCCCCCAGGAAAGATGGGATGCATTATTGGGAAAAAAGGGGCTTCAATTATGTCAATTAAGGAGTCTTGCAATGCGGAAATTCTCATTGGAGGTCCAAGGGGTCCAGCTGACAAGGTTTTCATCATTGGACCGGTGAAGCAGGTGAAGAAAGCTGAGGCGATGTTAAGGGGTAGACTATTGTATATCTGA 1059 0.4438 MASSSPPPPSQSYSSATPSYQFITHLPIAPSSPSEKVEEEEPRVPIHVVTKASQLPVDFLEPSPHSKIVIGFDCEAVDLCRDGALCIIQLAFPDAIYLVDAIEGGSVLIEACKPALESDYVTKVIHDCKRDSEALYFQFGIKLNNVVDTQIAYSLLEEQEGQRRLPDDYISLVGLLADPRYCGLSNVDKEEVRVLLRQDPNFWTYRPLSEQMIHSAADDVRFLLYIYHQMMAKLTERSLWLLAVRGALYCRCFCVNNNNYADWPSLPPIPDELKVDGNGPEEEILSVLDVPPGKMGCIIGKKGASIMSIKESCNAEILIGGPRGPADKVFIIGPVKQVKKAEAMLRGRLLYI* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0412 352 CDD KH-I 288 345 - -
Mtr1g0412 352 SMART kh_6 282 350 IPR004087 GO:0003676
Mtr1g0412 352 SMART 35exoneu6 46 235 IPR002562 GO:0003676|GO:0006139|GO:0008408
Mtr1g0412 352 PANTHER - 24 349 - -
Mtr1g0412 352 SUPERFAMILY Ribonuclease H-like 36 256 IPR012337 -
Mtr1g0412 352 Gene3D - 2 250 IPR036397 GO:0003676
Mtr1g0412 352 CDD Egl_like_exo 58 254 - -
Mtr1g0412 352 Pfam KH domain 288 346 IPR004088 GO:0003723
Mtr1g0412 352 ProSiteProfiles Type-1 KH domain profile. 283 345 - -
Mtr1g0412 352 Gene3D K Homology domain, type 1 287 350 IPR036612 GO:0003723
Mtr1g0412 352 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 279 348 IPR036612 GO:0003723
Mtr1g0412 352 PANTHER EGALITARIAN, ISOFORM B 24 349 - -
Mtr1g0412 352 Pfam 3'-5' exonuclease 65 234 IPR002562 GO:0003676|GO:0006139|GO:0008408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0412 K18740 - gmx:100788577 548.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0412 1 4637373 4644622 Mtr1g0412 1 4637373 4644622 ECH