Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00386 ATGGAGGAATACACTAATAATCCAAATCCAAATTCAAATCAAAGTTCAAGGCCAAATTTCTTGTACTCCATTGCCAGTGGAAACAACCAACACCAACACCAACACCATCACAATCATCAACATAATCAGATTCCAATGAACAACTTTCATCTTCAATCAAGTGGATCAGACAATTGTTTTCAGTCTGATCAAGTACAACAGCAACACTCTGCTGTGAAAACTGAAGCAAATAGTACTTCACAACTTCACACTCCGATTTTTCATTACCCAGCTTTAATGAGAACAAATATTATTCCACACACCAATATTATGCATAATCATCATCATCAAGGAGGAGGAGGAGGGAGTCCAAGCAGTTCTAGTGGTGAAGCTGAAGCTATAAAAGCTAAAATCATTGCTCATCCTCAATACTCTAGTCTTTTACAAGCTTACATGGATTGTCAAAAGATTGGAGCTCCACCGGAAGTGGTGGCTCGTTTGGTTGCGTCTAGGCAAGAGTTTGAAGCACGGCAAAGATCTTCAGTTAACTCGAGAGAAACTTCTAAAGATCCAGAACTAGACCAATTCATGGAAGCATATTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCTATACAAGAGGCTATGGATTTCATGAGAAGAATAGAAACTCAGCTAAATACACTTTGCAATGGACCCCTTCGGATCTTCTCTGATGATAAAAATGAAGGCGTTGGTTCATCAGAAGAGGATCAAGAGAATAGTGGTGGAGAAACAGATCAACTTCCAGAGATTGATCCTCGAGCAGAAGACCGTGAATTGAAAAATCACTTGCTGAAGAAATATAGTGGTTACTTAAGTAGTCTTAAGCAAGAACTTTCCAAGAAGAAAAAGAAAGGAAAATTGCCTAAAGAGGCTAGACAAAAGCTACTTAATTGGTGGGAATTGCATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTAGCATTGGCTGAGTCAACAGGTTTGGATCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAACCATCAGAAGACATGCAGTTTATGGTGATGGATGGACTGCATTCACAGAGCGCAGCTCTTTATATGGATGGTCATTACATGGCTGATGGTCCCTACCGTTTAGGGCCATGA 1164 0.3969 MEEYTNNPNPNSNQSSRPNFLYSIASGNNQHQHQHHHNHQHNQIPMNNFHLQSSGSDNCFQSDQVQQQHSAVKTEANSTSQLHTPIFHYPALMRTNIIPHTNIMHNHHHQGGGGGSPSSSSGEAEAIKAKIIAHPQYSSLLQAYMDCQKIGAPPEVVARLVASRQEFEARQRSSVNSRETSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNTLCNGPLRIFSDDKNEGVGSSEEDQENSGGETDQLPEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHSQSAALYMDGHYMADGPYRLGP 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00386 387 ProSiteProfiles 'Homeobox' domain profile. 289 352 IPR001356 GO:0003677
Mepo4g00386 387 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 43 359 - -
Mepo4g00386 387 MobiDBLite consensus disorder prediction 46 80 - -
Mepo4g00386 387 Pfam KNOX1 domain 126 168 IPR005540 GO:0003677|GO:0005634
Mepo4g00386 387 SMART KNOX1_2 125 169 IPR005540 GO:0003677|GO:0005634
Mepo4g00386 387 Gene3D - 286 359 - -
Mepo4g00386 387 MobiDBLite consensus disorder prediction 105 124 - -
Mepo4g00386 387 SUPERFAMILY Homeodomain-like 290 364 IPR009057 -
Mepo4g00386 387 ProSiteProfiles ELK domain profile. 269 289 IPR005539 GO:0003677
Mepo4g00386 387 SMART HOX_1 291 356 IPR001356 GO:0003677
Mepo4g00386 387 FunFam Homeobox protein knotted-1-like 2 294 356 - -
Mepo4g00386 387 Pfam ELK domain 269 290 IPR005539 GO:0003677
Mepo4g00386 387 SMART KNOX2_2 176 227 IPR005541 GO:0003677|GO:0005634
Mepo4g00386 387 CDD homeodomain 301 353 IPR001356 GO:0003677
Mepo4g00386 387 ProSitePatterns 'Homeobox' domain signature. 327 350 IPR017970 GO:0000981|GO:0006355
Mepo4g00386 387 MobiDBLite consensus disorder prediction 1 23 - -
Mepo4g00386 387 SMART ELK_2 269 290 IPR005539 GO:0003677
Mepo4g00386 387 MobiDBLite consensus disorder prediction 233 263 - -
Mepo4g00386 387 Pfam KNOX2 domain 180 226 IPR005541 GO:0003677|GO:0005634
Mepo4g00386 387 Pfam Homeobox KN domain 309 348 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00386 Mepo-Chr4 5735998 5746475 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00386 56 387 Homeobox Transcription Factor Family AT4G08150 70.294 5.61e-154 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mepo4g00386 KNOX2 1.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00386 - - gmx:100800822 569.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g00386 4 5735998 5746475 Mepo4g00386 4 5735998 5746475 ECH