Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00368 ATGGGTGGTGAGGAAAATGCAATGGAGTTTCAACATGGAAATGAGAATATTATGAGTTCTTGTCCGTCTTCAGAAATGGATATTAGTTCTGTATCTAATATGGCTAAGACTTCTTCAGATGTAGTTAATCATCATCAGCAGCAGCAGCAGCATCATTTCATGGCTTCTTCAGCTTGGGATAATCCACTTGTTTCATTGAGTCAAGCTCATACTTTTGGTGGTTCTTCAATGGTTTCTCATAATGAGTTTGCTAATGCAAATTCATCTTATAACCCTCTTGTTTTGGAGAATCAAGGGATGAGTAGCACTTCTCATCTTGTTCAATACTCAAATCTTGGAGGCATGATCCATAAGATTCCTTCCTATGGAAGTGGAAGTTTCTCAGAAATGGTTGGTTCCTTTGGCCAACATGGGTCAGGTGGGGAACATGTAGCTAACACATCAGGGTATCCAATTCCATCACAGCATTATAATCACATCAAAGATGCTGGAATCCAAAGGGGTCAAATTAATGGTGAACAATCTCAGATTGAGGACTCTATTCATGAGGATGGAGGTACAGGATCTGCACCTGGTAGTGGAAGTAGAAGAAAAAGAGGACTTGATCAAAATTCTTCTTTCAGTCCAAACAAGAATGCTGAGGGTGATGGAGTGAAAGATTCTCCAAGGAAAATTTCTGATGGTTCAAAAGAACATGATAAGAAACCAAAAGTTGAACAATCAGGGAAGCAAGCTAAAGATAACTCTCCCAGTGGAGATGCTTCTAAAGATAATTTCATTCATGTGAGAGCTAGAAGAGGTCAAGCCACAAACAGTCACAGCCTTGCAGAAAGGGTTAGAAGAGAAAAGATTAGTGAACGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGCAAAGCAGTAATGCTAGATGAGATAATAAACTATGTGCAATCACTGCAGCAACAGGTTGAGTTTTTGTCAATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTAGAGCGGCTCTTATCCAAGGATATTCTCCAGTCACGCTTAGGACTCGGAATAGGTGGATTTGTTCCTGGTGTAAGCTCCTCTCACCCATTCCCAAATGCAAGTTTCCAGGGTAACATGGCTGGCATGCCTAGTTCATCGACACAATTCCCTCCTTTGTCTCAGAATGCTTTGGACCATGACTTCCAAAACTTTTATGGAATGGGATATGATCCCAATACAGCACTTGACAATTTGGGACCCAATGGGAGGTTGAAACCAGAGTTATAG 1287 0.4103 MGGEENAMEFQHGNENIMSSCPSSEMDISSVSNMAKTSSDVVNHHQQQQQHHFMASSAWDNPLVSLSQAHTFGGSSMVSHNEFANANSSYNPLVLENQGMSSTSHLVQYSNLGGMIHKIPSYGSGSFSEMVGSFGQHGSGGEHVANTSGYPIPSQHYNHIKDAGIQRGQINGEQSQIEDSIHEDGGTGSAPGSGSRRKRGLDQNSSFSPNKNAEGDGVKDSPRKISDGSKEHDKKPKVEQSGKQAKDNSPSGDASKDNFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERLLSKDILQSRLGLGIGGFVPGVSSSHPFPNASFQGNMAGMPSSSTQFPPLSQNALDHDFQNFYGMGYDPNTALDNLGPNGRLKPEL 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00368 428 FunFam Basic helix-loop-helix transcription factor 265 337 - -
Mepo4g00368 428 MobiDBLite consensus disorder prediction 216 242 - -
Mepo4g00368 428 MobiDBLite consensus disorder prediction 198 212 - -
Mepo4g00368 428 CDD bHLH_AtBPE_like 258 343 - -
Mepo4g00368 428 Pfam Helix-loop-helix DNA-binding domain 271 319 IPR011598 GO:0046983
Mepo4g00368 428 MobiDBLite consensus disorder prediction 179 256 - -
Mepo4g00368 428 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 166 379 IPR024097 GO:0006355
Mepo4g00368 428 SMART finulus 274 324 IPR011598 GO:0046983
Mepo4g00368 428 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 266 336 IPR036638 GO:0046983
Mepo4g00368 428 Gene3D - 265 339 IPR036638 GO:0046983
Mepo4g00368 428 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 268 318 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00368 Mepo-Chr4 5550995 5555512 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00368 1 428 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 42.568 3.88e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo4g00368 HLH 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00368 - - gmx:100794464 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g00368 4 5550995 5555512 Mepo4g00368 4 5550995 5555512 ECH