LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo3g07248	ATGGAAAACTCGGAGATGATCAATGCTGGAAACCTCCCTGAGAAGACAACAAACACAGAATGTGTTTCCACTGACGACGAAAACATCATACTAAATCCTGAGTTCGAGGATGGCTTGAATAATTGGACTGGAAGAGGCTGCAAGATTGCAATACATGAGTCCATGGCAAATGGGAAAATCCTTCCGAAATCCGGGAAATTCTTTGCATCTGCAACCGAACGCACACAAAGCTGGAATGGAATTCAGCAAGAGATCACTGGACGAGTGCAGCGCAAGCTTGCCTATGAGGTCACTGCTTTAGTTCGGATATATGGGAACAATGTCACTACTTCTGATATACGTGCTACGTTGTATGTTCAAAAACCAGATCTTCGAGAGCAATATATAGGCATTGCTAATGTGCAGGCAACAGATAAAGATTGGGCTCAAATGCAGGGAAAGTTCCTTCTAAATGATTCCCCCTCAAAAGTAGTTGTTTATTTGGAAGGTCCCCCTGGAGGCACTGACATTCTTGTAAATACTTTTGTTATAAAGCATGCAGCTAAATCACCACCTTCGACACCCCCTGATTTTGAGAATGTTGCTTTTGGTGTTAATATAATTGAGAACAGCAATCTGGACAATGGCACCAACGGGTGGTCTCCTCTTGGTAATTGTACTTTGAGCGTCGGAACTGGTTCACCCCGTGTTATTCCACCAATGGCAAGAGACTCTCTTGGTCCTCATGAACCCCTGAGTGGACATTACATTCTTGTAACTAATCGCACACAAACATATATGGGTCCTTCTCAGGCGATCACTGAGAAATTGAAACTCTATTTAACATATCAAGTATCTGCTTGGGTCAGGATTGGTTCCGGATCACACGGCCCTCAGAATGTTGGTATTGCCTTTAGTGTTGACGGCCAATGGGCCAACGGAGGACAGACCCAAGTTTCCGACAGCAGATGGCATGAAATCGGTGGTTCGTTTAGAATTGAAAAGCAGCCATCTAATGTTTTTGTTTACATTCAAGGTCCAGTTTCTGGTGTTGACTTAATGGTTGCTGGACTTCAAATTTTTCCTGTCGATAGGCAGGCAAGGTTTAGATATTTATGCGAGCAGACAGACAAGATCCGTAAGCGTGATGTTACATTAAAATTTTCCGGGCTGGACACAAGCGAGTATACCTTTGTGAAAGTTAAACAAATACAGAATGATTTTCCAATTGGATCGTGCATCAATAGAACAAATATTGACAATGAAGATTTTGTTGACTTCTTTGTGCAACATTTTAACTGGGCTGTATTTGGTAACGAGTTGAAGTGGTTTTGGACAGAGCCACAAAAGGGGAATTTCAACTATAAGGATGCTGATGATATGTTAGACTTGTGTCAGAAGTACAAGATAGACATTCGCGGACATTGCATCTTCTGGGAAGTGGACAGCAATGTTCAACAATGGGTCAAATCACTGAATAAAAATGATTTACTGACGGCTGTTCAAAATCGCTTAACTGGCTTATTGTCTCGCTACAAAGGCAAGTTCAAGCACTATGATGTTAACAATGAAATGTTGCATGGTTCATTTTATCAAGACAGACTAGGCAAGGATATAAGGGCAAACATGTTCAAGATTGCACACCAGCTAGATCCTTCTGCTACCCTATTTGTGAATGATTATCATGTTGAAGATGGAGACGATGCATATTCATCGCCAGAAATATACACACAACAGATTCTTGATTTACAAGATCAAGGTGCACCGGTTGGGGGAATAGGAATTCAAGGTCACATTGATAGTCCTGTGGGGCCTATTGTTTGTTCTGCACTCGATAAGTTGGCTACTCTTGGTCAGCCAATATGGTTTACCGAGCTTGATGTTTCTTCCACTAATGAATATGTTCGAGGCGATGATTTGGAAGTTATGTTGCGCGAAGCTATGGCACACCCTGCTGTAGATGGTGTAATGCTATGGGGATTTTGGGAGTTGTTTATGAGCCGCGACAATGCACATTTGGTGAATGCAGAAGGTGAAATCAATGAAGCTGGGAGAAGATTCCTTGATCTTAAAGAAGAGTGGTTATCTCACACTCATGGTCATCTTGATGAGCAAGGGGAATTCAACTTCAGGGGATTCAGTGGTCTGTACAATGTGGAAATTGTTACCTTTGAAAAGGTAATTTGTCAGACATTCGTTGTTGATAAGGGTAACTCTTCATTGGTGATATCAATCGATTTGTAA	2223	0.4179	MENSEMINAGNLPEKTTNTECVSTDDENIILNPEFEDGLNNWTGRGCKIAIHESMANGKILPKSGKFFASATERTQSWNGIQQEITGRVQRKLAYEVTALVRIYGNNVTTSDIRATLYVQKPDLREQYIGIANVQATDKDWAQMQGKFLLNDSPSKVVVYLEGPPGGTDILVNTFVIKHAAKSPPSTPPDFENVAFGVNIIENSNLDNGTNGWSPLGNCTLSVGTGSPRVIPPMARDSLGPHEPLSGHYILVTNRTQTYMGPSQAITEKLKLYLTYQVSAWVRIGSGSHGPQNVGIAFSVDGQWANGGQTQVSDSRWHEIGGSFRIEKQPSNVFVYIQGPVSGVDLMVAGLQIFPVDRQARFRYLCEQTDKIRKRDVTLKFSGLDTSEYTFVKVKQIQNDFPIGSCINRTNIDNEDFVDFFVQHFNWAVFGNELKWFWTEPQKGNFNYKDADDMLDLCQKYKIDIRGHCIFWEVDSNVQQWVKSLNKNDLLTAVQNRLTGLLSRYKGKFKHYDVNNEMLHGSFYQDRLGKDIRANMFKIAHQLDPSATLFVNDYHVEDGDDAYSSPEIYTQQILDLQDQGAPVGGIGIQGHIDSPVGPIVCSALDKLATLGQPIWFTELDVSSTNEYVRGDDLEVMLREAMAHPAVDGVMLWGFWELFMSRDNAHLVNAEGEINEAGRRFLDLKEEWLSHTHGHLDEQGEFNFRGFSGLYNVEIVTFEKVICQTFVVDKGNSSLVISIDL	740

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo3g07248	740	ProSiteProfiles	Glycosyl hydrolases family 10 (GH10) domain profile.	388	683	IPR001000	GO:0004553\|GO:0005975
	Mepo3g07248	740	PANTHER	GLYCOSYL HYDROLASE	184	731	IPR044846	GO:0004553\|GO:0005975
	Mepo3g07248	740	SUPERFAMILY	Galactose-binding domain-like	26	180	IPR008979	-
	Mepo3g07248	740	SUPERFAMILY	(Trans)glycosidases	392	690	IPR017853	-
	Mepo3g07248	740	FunFam	Endo-1,4-beta-xylanase A	389	691	-	-
	Mepo3g07248	740	FunFam	Glycosyl hydrolase family 10 protein	23	179	-	-
	Mepo3g07248	740	Pfam	Glycosyl hydrolase family 10	396	654	IPR001000	GO:0004553\|GO:0005975
	Mepo3g07248	740	Coils	Coil	666	686	-	-
	Mepo3g07248	740	SMART	glyco_10	434	684	IPR001000	GO:0004553\|GO:0005975
	Mepo3g07248	740	Pfam	Carbohydrate binding domain	199	340	IPR003305	GO:0016798
	Mepo3g07248	740	Pfam	Carbohydrate binding domain	28	164	IPR003305	GO:0016798
	Mepo3g07248	740	Gene3D	-	22	180	-	-
	Mepo3g07248	740	Gene3D	-	195	354	-	-
	Mepo3g07248	740	SUPERFAMILY	Galactose-binding domain-like	197	357	IPR008979	-
	Mepo3g07248	740	Gene3D	Glycosidases	387	695	-	-
	Mepo3g07248	740	PRINTS	Glycosyl hydrolase family 10 signature	465	477	IPR001000	GO:0004553\|GO:0005975
	Mepo3g07248	740	PRINTS	Glycosyl hydrolase family 10 signature	547	558	IPR001000	GO:0004553\|GO:0005975
	Mepo3g07248	740	PRINTS	Glycosyl hydrolase family 10 signature	579	591	IPR001000	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo3g07248	Mepo-Chr3	86138999	86142655	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo3g07248	14	740	Glycoside Hydrolase	AT1G58370	69.767	0.0	1096

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo3g07248	-		-	gmx:100784250	1279.62

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mepo3g07248	3	86138999	86142655	Mepo3g07248	3	86138999	86142655	ECH
	Mepo4g00387	4	5781071	5786299	Mepo3g07248	3	86138999	86142655	PCT