Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03206 ATGGAAAACCGTATCTACACATCCTCTTACAACATCCCAACCGGAGCAGCTCCATCAACAACATCCCCGACCCAATATTACGACCCGAATACAATGTTCCTCGCTCACTATCGCCGCACCGCCGAAGCCGCCGCCGCCGCTGCTTCCTCCATCCGCTACTCCTCCGATTTTGACATTGCTCCTCCTGGAGTTGTTTCTAGAATCTCCACCACTAATCCTTGGGCGAATGCTTTCCCCTCCGCCGCTGCCGCCGTCGCCGCCGCGGCAACAAATGTTGGCTCCGCTGCTTCACTTGATCTTAAACGCTCTTCTGATGCGCTCTACCATCCATCCATTTTGAGTACAATTGGGCAAAACGAAGCTTGGTATACGTCGAACTCACTAGCCAAGCGCCCTAGATATGAAACCGGAAGTACTTTGCCTATTTATCCACAGAGGCCAGGAGAGAAGGATTGTGCCCACTATATGCTAACAAGAACCTGTAAATTTGGAGAGAGCTGCAAGTTCGATCATCCTATTTGGGTTCCTGCGGGTGGAATCCCAGATTGGAAAGAGGTTCCAAATATTGTTCCAAGTGAAACTCTTCCCGAGAGACCTGGAGAACCAGATTGTCCATTCTTTCTGAAAACTCAAAAATGCAAGTTTGGTTCAAAGTGCAAATTTAATCATCCAAATGTTCCCTCTGAAAATGCCGATGTTTCTGGCTTACCTGAGAGGCCAATGGAGCCCCCTTGCGCGTTCTACTTGAAAACTGGAAAATGTAAATACGGTGCTGCATGCAAATTCCATCACCCCAAGGATATCCAGATTCAATTATCTGATGATTTGAGCCGTACTGTTGAGCAGACACAAACAAATTCTTCTGTGTTTGATGGGGCAATAGGAGATACACAGTCAATTATGCCTCTTATATCTCCACTGTCGCATAATAGCAAAGGGCTTCCTGTGAGACCGGGGGAAGTGGATTGTCCATTCTACATGAAAACTGGAAGTTGCAAGTTCGGTGCCAGTTGCCGCTACAATCATCCCGACATGAATGCCATTAATCCACCAGTGTCAGCATTGGGCCCTTCTGTTTTGGCATCCTCAACTGCTAATCTTAACATTGGAGCTATTAATCCAGCTGCATCTTTTTATCAAGCTTTTGACACCAGTCTGTCAAATCCAATGTCTCAGGTGGGAGTAACAGGGACTATCTATCCTCAGCGCCCTGGACAGATTGAATGTGATTTCTATATGAAATCTGGCATATGTAAATTTGGGGAAAGATGCAAGTACCATCACCCAATCGACCGCACAACATCACTGTCAAAACTGCAATCAAATGTTAAACTTACTGCTGCAGGGTTACCAAGAAGAGAGGGTGTTGAGATCTGTCCATATTATTTGAAAACTGCAACGTGCAAGTTTGGTGCAACATGCAAATTTGACCATCCACCACCAGGAGAAGTGATGGAGATGGCCAAGTCACAAGGAGCTTCTTCAACAAATGAAGGAGAAACAGAGACCAATGAAGATGTGCCTGGTTCTGCTCCGGAACAATATTGA 1548 0.4625 MENRIYTSSYNIPTGAAPSTTSPTQYYDPNTMFLAHYRRTAEAAAAAASSIRYSSDFDIAPPGVVSRISTTNPWANAFPSAAAAVAAAATNVGSAASLDLKRSSDALYHPSILSTIGQNEAWYTSNSLAKRPRYETGSTLPIYPQRPGEKDCAHYMLTRTCKFGESCKFDHPIWVPAGGIPDWKEVPNIVPSETLPERPGEPDCPFFLKTQKCKFGSKCKFNHPNVPSENADVSGLPERPMEPPCAFYLKTGKCKYGAACKFHHPKDIQIQLSDDLSRTVEQTQTNSSVFDGAIGDTQSIMPLISPLSHNSKGLPVRPGEVDCPFYMKTGSCKFGASCRYNHPDMNAINPPVSALGPSVLASSTANLNIGAINPAASFYQAFDTSLSNPMSQVGVTGTIYPQRPGQIECDFYMKSGICKFGERCKYHHPIDRTTSLSKLQSNVKLTAAGLPRREGVEICPYYLKTATCKFGATCKFDHPPPGEVMEMAKSQGASSTNEGETETNEDVPGSAPEQY 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03206 515 ProSiteProfiles Zinc finger C3H1-type profile. 198 226 IPR000571 GO:0046872
Mepo1g03206 515 SUPERFAMILY CCCH zinc finger 203 224 IPR036855 GO:0046872
Mepo1g03206 515 ProSiteProfiles Zinc finger C3H1-type profile. 146 174 IPR000571 GO:0046872
Mepo1g03206 515 ProSiteProfiles Zinc finger C3H1-type profile. 239 267 IPR000571 GO:0046872
Mepo1g03206 515 SUPERFAMILY CCCH zinc finger 405 432 IPR036855 GO:0046872
Mepo1g03206 515 MobiDBLite consensus disorder prediction 482 515 - -
Mepo1g03206 515 ProSiteProfiles Zinc finger C3H1-type profile. 403 431 IPR000571 GO:0046872
Mepo1g03206 515 FunFam zinc finger CCCH domain-containing protein 37 401 494 - -
Mepo1g03206 515 ProSiteProfiles Zinc finger C3H1-type profile. 317 345 IPR000571 GO:0046872
Mepo1g03206 515 SUPERFAMILY CCCH zinc finger 456 480 IPR036855 GO:0046872
Mepo1g03206 515 SMART c3hfinal6 198 225 IPR000571 GO:0046872
Mepo1g03206 515 SMART c3hfinal6 317 344 IPR000571 GO:0046872
Mepo1g03206 515 SMART c3hfinal6 453 480 IPR000571 GO:0046872
Mepo1g03206 515 SMART c3hfinal6 403 430 IPR000571 GO:0046872
Mepo1g03206 515 SMART c3hfinal6 239 266 IPR000571 GO:0046872
Mepo1g03206 515 SMART c3hfinal6 146 173 IPR000571 GO:0046872
Mepo1g03206 515 ProSiteProfiles Zinc finger C3H1-type profile. 453 481 IPR000571 GO:0046872
Mepo1g03206 515 PANTHER PROTEIN PHOSPHATASE RELATED 306 364 - -
Mepo1g03206 515 FunFam Zinc finger CCCH domain-containing protein 37 105 183 - -
Mepo1g03206 515 Gene3D - 189 234 - -
Mepo1g03206 515 Gene3D - 101 185 - -
Mepo1g03206 515 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 200 224 IPR000571 GO:0046872
Mepo1g03206 515 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 243 266 IPR000571 GO:0046872
Mepo1g03206 515 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 406 429 IPR000571 GO:0046872
Mepo1g03206 515 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 148 172 IPR000571 GO:0046872
Mepo1g03206 515 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 455 480 IPR000571 GO:0046872
Mepo1g03206 515 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 319 343 IPR000571 GO:0046872
Mepo1g03206 515 Gene3D - 237 353 - -
Mepo1g03206 515 FunFam Zinc finger CCCH domain-containing protein 37 184 231 - -
Mepo1g03206 515 SUPERFAMILY CCCH zinc finger 244 267 IPR036855 GO:0046872
Mepo1g03206 515 Gene3D - 402 496 - -
Mepo1g03206 515 MobiDBLite consensus disorder prediction 489 515 - -
Mepo1g03206 515 SUPERFAMILY CCCH zinc finger 147 173 IPR036855 GO:0046872
Mepo1g03206 515 SUPERFAMILY CCCH zinc finger 321 344 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03206 Mepo-Chr1 36803804 36810532 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03206 439 502 C2H2 Transcription Factor Family AT3G02830 35.385 3.79e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo1g03206 zf-CCCH 2.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03206 - - gmx:100793976 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g03206 1 36803804 36810532 Mepo1g03206 1 36803804 36810532 ECH