Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2071 ATGCCGACATTGCTCCTCCTGGAGTTGGTTCTAGAATCTCCTCTTTCTCCACCACTAATCCTTGGGCTAATGCTTTCCCCTCCGCCGCTGCCGCCGTCGCCGCCGCTAATGGTGTCTCTTCTTCAATTGATCTTAAACGCTCTTCTGATGGTTCCAACTATTGTTCCAAGTGAAACTCTTCCTGAGAGACCTGGAGAACCAGACTGTCCATTCTTTCTGAAAACTAAAAAATGCAAGTTTGGTTCAAAATGCAAATTTAATCATCCAAATGTTCCCTCTGAAAATGCTGATGTTTCTGGCTTACCTGAAAGGCCGCTAGAGCCCCCTTGTGCGTTCTACTTGAAAACTGGAAAATGTAAATATGGTGCTGCATGCAAATTCCATCACCCCAAGGATATCCAGATACAGTTCTCTGATGAATTGAGCCGTACCGTTGAGCAGACACAAACAAATTCTTCTGTGTTTGACGGGGCAGTAGGAGATACACAACCGATTAAGCCTCTTATATCTCCACTCTCGCATAATACCAAAGGGCTTCCTGTGAGACCGGGGGAAGTGGATTGTCCATTCTACATGAAAACTGGAAGTTGCAAGTTTGGTGCCAGTTGCCGCTACAATCATCCTGACGTGAATGCCATTAATCCACCCATCTCTGCATTGGGCCCGTCTGTTTTGGCGTCCTCAACTCCTCATCTTAACATTGGAGCTATTAATCCATCTGCATCTTTTTATCAAGCTTTTGACCCCAGGCTGTCAAATCCAATGTCTCAGGTGGGAGTAACAGGGACTATCTATCCTCAGCGCCCTGGACAGATTGAATGTGACTTCTATATGAAATCTGGCATATGTAAATTTGGGGAAAGATGCAAGTACCATCACCCAATTGACCGCACAACATCACTGTCAAAATTGCAATCAAATGTTAAACTTACTGCTGCAGGGTTACCAAGAAGAGAGGGTGTCGAGATCTGCCCATATTATTTGAAAACTGCAACGTGCAAGTTTGGTGCAACATGCAAATTTGACCATCCACCACCAGGAGAAGTTATGGAGATGGCAAAGTCACAAGGAGCTTCTACAACCAATGGAGGAGAAGCAGAGACCAACGAAAATGTGCCTGGTTCTGCTCCGGAACAATAG 1140 0.4526 MPTLLLLELVLESPLSPPLILGLMLSPPPLPPSPPLMVSLLQLILNALLMVPTIVPSETLPERPGEPDCPFFLKTKKCKFGSKCKFNHPNVPSENADVSGLPERPLEPPCAFYLKTGKCKYGAACKFHHPKDIQIQFSDELSRTVEQTQTNSSVFDGAVGDTQPIKPLISPLSHNTKGLPVRPGEVDCPFYMKTGSCKFGASCRYNHPDVNAINPPISALGPSVLASSTPHLNIGAINPSASFYQAFDPRLSNPMSQVGVTGTIYPQRPGQIECDFYMKSGICKFGERCKYHHPIDRTTSLSKLQSNVKLTAAGLPRREGVEICPYYLKTATCKFGATCKFDHPPPGEVMEMAKSQGASTTNGGEAETNENVPGSAPEQ* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2071 379 SUPERFAMILY CCCH zinc finger 186 208 IPR036855 GO:0046872
Mal5g2071 379 Gene3D - 172 215 - -
Mal5g2071 379 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 65 89 IPR000571 GO:0046872
Mal5g2071 379 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 184 208 IPR000571 GO:0046872
Mal5g2071 379 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 108 131 IPR000571 GO:0046872
Mal5g2071 379 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 320 345 IPR000571 GO:0046872
Mal5g2071 379 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 271 294 IPR000571 GO:0046872
Mal5g2071 379 PANTHER CCCH ZINC FINGER/TIS11-RELATED 52 359 IPR045877 GO:0003729
Mal5g2071 379 ProSiteProfiles Zinc finger C3H1-type profile. 182 210 IPR000571 GO:0046872
Mal5g2071 379 SUPERFAMILY CCCH zinc finger 270 297 IPR036855 GO:0046872
Mal5g2071 379 ProSiteProfiles Zinc finger C3H1-type profile. 63 91 IPR000571 GO:0046872
Mal5g2071 379 SUPERFAMILY CCCH zinc finger 109 132 IPR036855 GO:0046872
Mal5g2071 379 ProSiteProfiles Zinc finger C3H1-type profile. 268 296 IPR000571 GO:0046872
Mal5g2071 379 SUPERFAMILY CCCH zinc finger 321 345 IPR036855 GO:0046872
Mal5g2071 379 MobiDBLite consensus disorder prediction 351 379 - -
Mal5g2071 379 MobiDBLite consensus disorder prediction 354 379 - -
Mal5g2071 379 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 52 359 - -
Mal5g2071 379 ProSiteProfiles Zinc finger C3H1-type profile. 104 132 IPR000571 GO:0046872
Mal5g2071 379 Gene3D - 267 360 - -
Mal5g2071 379 SUPERFAMILY CCCH zinc finger 68 89 IPR036855 GO:0046872
Mal5g2071 379 SMART c3hfinal6 182 209 IPR000571 GO:0046872
Mal5g2071 379 SMART c3hfinal6 63 90 IPR000571 GO:0046872
Mal5g2071 379 SMART c3hfinal6 104 131 IPR000571 GO:0046872
Mal5g2071 379 SMART c3hfinal6 318 345 IPR000571 GO:0046872
Mal5g2071 379 SMART c3hfinal6 268 295 IPR000571 GO:0046872
Mal5g2071 379 Gene3D - 57 135 - -
Mal5g2071 379 ProSiteProfiles Zinc finger C3H1-type profile. 318 346 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2071 Mal-Chr5 47332284 47338404 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2071 303 367 C2H2 Transcription Factor Family AT3G02830 34.848 2.43e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal5g2071 zf-CCCH 1.4e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2071 - - cam:101499264 574.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g2071 5 47332284 47338404 Mal5g2071 5 47332284 47338404 ECH