Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g1086 ATGGGAAGGGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGACCTTGGTCACCTGAAGAAGATGACAAGCTGAAATCCTACATCCAACAACATGGAACTGGTGGTAACTGGATCACTTTGCCACAAAAGATTGGTCTTAAGCGATGTGGCAAGAGTTGTCGTCTGAGGTGGCTAAACTATCTTCGCCCTAACATCAAGCACGGTGGTTTCACCGAAGAAGAAGACAACATCATTTGCAGCCTTTACGTTAGTATTGGAAGCAGATGGTCAGTGATTGCGGGCCAATTGCCGGGAAGAACAGATAATGATATAAAGAATTATTGGAACACAAAACTGAAAAAGAAGCTTTTAGGGAAGCATCGTAAAGAACAACAATTACAAGCACGTAATAAATTATTAGCTACTGCTAATGGTACTGTAGTTAATGTTAATCATGAGAGCAATGGAAGAAGGAGTGAGAATTCTTCATCTAATTTGGTTTCTGATCAACATATTTTACAGCCATATTGTTGGCCACAAAATATTCATCCACCGTTGACCTACACAAACCAAGGTTCTAGTTTCAATGATCAAGATTCTATTAGAAGATTTCTAATCAAACTTGGAGGGAGATTCTCTGATGAAGATGATTATTATCAATTACCTGATGCTGGTGTTCCTGCAAGACAACAAGACTACGATATTTCTGGTTGCATCAACTCTAACAACCAAGTCTTGCAATATTTCTCTCAAACTCAACCTAATCAATATGGAGTAGCAGGATCAGAATTGGTACAAGGACAAGTAAGTTTCACTGAAACAACAACATCTAGTAGTAATAATAATTATTATCCGCAAAAGTTAAGTGGGTTGGAGTTGGAATTCATCTATGGAGAGGACACAATTTGTGGGCAAAGTAGTAACTGGGTTGAGGACATGACTGATCAGAGCAGTAGTAGTATGATATATCCTCCGGTCGGTTCGTCGAATTTCCAAGAAGTGAAGACACAAGAATGTGTTTTTCAAGAGTTGAGTTACCCTGGGGAGATATAG 1035 0.3932 MGRAPCCDKANVKKGPWSPEEDDKLKSYIQQHGTGGNWITLPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYVSIGSRWSVIAGQLPGRTDNDIKNYWNTKLKKKLLGKHRKEQQLQARNKLLATANGTVVNVNHESNGRRSENSSSNLVSDQHILQPYCWPQNIHPPLTYTNQGSSFNDQDSIRRFLIKLGGRFSDEDDYYQLPDAGVPARQQDYDISGCINSNNQVLQYFSQTQPNQYGVAGSELVQGQVSFTETTTSSSNNNYYPQKLSGLELEFIYGEDTICGQSSNWVEDMTDQSSSSMIYPPVGSSNFQEVKTQECVFQELSYPGEI* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g1086 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Mal2g1086 344 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Mal2g1086 344 PANTHER OS09G0431300 PROTEIN 1 205 - -
Mal2g1086 344 CDD SANT 71 111 IPR001005 -
Mal2g1086 344 CDD SANT 16 62 IPR001005 -
Mal2g1086 344 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Mal2g1086 344 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Mal2g1086 344 Gene3D - 7 68 - -
Mal2g1086 344 SMART sant 13 64 IPR001005 -
Mal2g1086 344 SMART sant 67 115 IPR001005 -
Mal2g1086 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Mal2g1086 344 Gene3D - 70 136 - -
Mal2g1086 344 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Mal2g1086 344 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Mal2g1086 344 PANTHER OS09G0431300 PROTEIN 1 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g1086 Mal-Chr2 12663913 12665191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g1086 1 210 MYB Transcription Factor Family AT3G49690 59.624 3.53e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal2g1086 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g1086 K09422 - gmx:100790407 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g1086 2 12663913 12665191 Mal2g1086 2 12663913 12665191 ECH
Mal1g5654 1 132732694 132734144 Mal2g1086 2 12663913 12665191 PCT