LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal2g1083	ATGGAAAACTCAGAGATGATCAATGCTGGAAACCTCTCAGAGAAGACAACAAACACAGTATGTGTTTTCACTGATGACGAAAACATCATACTAAATCCTCAGTTCGAGGATGGCCTGAATAATTGGACTGGAAGAGGCTGCAAGATTGCAGTACATGATTCCATGGCAAATGGGAAAATCCTTCCGAAATCCGGGAAATTCTTTGCATCTGCAAGCGAACGCACACAAAGCTGGAATGGAATTCAGCAAGATATCACTGGACGAGTGCAGCGCAAGCTTGCCTATGAGGTCACTGTTTTAGTTCGGATATTTGGGAACAATGTCACTACTTCTGATGTACGTGCTACACTCTATGTTCAAAAACCAGATCTTCGAGAGCAATATATAGGCATTGCCAATGTGCAGGCCACAGATAAAGATTGGGCTCAAATGCAGGGAAAGTTCCTTCTAAATGATTCTCCCTCAAAAGTAGTTGTTTATTTGGAAGGCCCCCCAGCAGGCACTGACATTCTTGTAAATACTTTTGTTATAAAGCATGCAGCTAAAACACCACCTTCGACACCACCAGATTTTGAGAATGTTGCTTTTGGTGTTAATATAATTGAGAACAGCAATCTGGACAACGGAACCACCGGGTGGTCTCCTCTTGGTAATTGTACTTTGAGCGTTGGAACTGGTTCACCGCGTGTTATTCCACCAATGGCAAGAGACTCTCTTGGTCCTCATGTACCCCTGAGTGGACGTTACATTCTTGTAACCAATCGCACACAAACATGGATGGGTCCTTCTCAGACAATCACTGAGAAATTGAAACTCTATTTAACTTACCAAGTATCTGCTTGGGTCCGGATTAGTTCCGGATCACATGGGCCTCAGAATGTGGGTATCGCCTTTAGTGTTGACGGCCAGTGGGCCAACGGAGGACAAACCCAAGTTGCAGACGGCAGATGGCATGAAATCGGTGGTTCGTTTAGAATTGAAAAGCAGCCATCTAATAGTGTCTTTGTTTATGTTCAAGGTCCTGTTCCTGGTGTTGACTTAATGGTTGCTGGACTTCAAATTTTTCCTGTCGATAGGCAGGCGAGGTTTAGATATTTAAGGAATCAGACAGACAAGATCCGTAAGCGTGATGTTACTTTAAAATTTTCCGGGCTGGACACAAGCGAGTATACCTTTGTGAAAGTTAAACAAATACAGAACGATTTTCCAATTGGATCGTGCATCAATAGAACAAATATTGACAATGAAGATTTTGTTGACTTCTTTGTGCAACATTTTAACTGGGCTGTATTTGGTAATGAGTTGAAGTGGTATTGGACAGAACCACAAAAAGGGAATTTCAACTATAAGGATGCTGATGATATGTTAGACTTGTGTCAGAAGTACAAGATAGACATTCGCGGGCATTGTATCTTCTGGGAAGTGGACAGCAATGTTCAACAATGGATCAAATCACTGAATAAAAATGATTTAATGACGGCTGTCCAAAATCGCTTAAATGGCTTATTGACTCGCTACAAAGGCAAGTTCAGGCACTATGATGTTAACAATGAAATGTTGCATGGTTCATTTTATCAGGACAGACTAGGTAAGGATATAAGGGCAAACATGTTCAAGATTGCACACCAACTAGATCCATCTGCTACCTTATTTGTGAATGATTATCATGTTGAAGATGGATGTGATACTAATTCATCTCCGGAAAAATACATGCAACAGATTCTTGATTTACAAGATCAAGGTGCACCGGTTGGGGGAATTGGAATTCAAGGTCACATTGATAGTCCTGTGGGGCCTATCGTTTGTTCTGCACTCGATAAGTTGGCTACTCTTGGTCTACCAATATGGTTTACTGAGCTTGATGTGTCTTCTACTAATGAATATGTTAGAGGTGATGATTTGGAAGTTATGCTGCGCGAAGCTATGGCGCACCCTGCTGTAGACGGTGTAATGCTATGGGGATTTTGGGAGTTGTTTATGAGCCGCGAGAATTCACACTTGGTGAATGCAGAAGGTGAAATCAATGAAGCTGGGAGAAGATTCCTTGATCTTAAAGAAGAGTGGTTATCTCACACTCATGGTCATGTTGATGAGCAAGGGGAATTCAACTTCAGGGGATTCAGTGGTTTGTACAATGTGGAAATTGTTACCTTTGAAAGGGAAATTTGCCAGACATTCGTTGTTGATAAGGGTAACTCTTCATTGGTGATATCAATCGACTTGTAA	2226	0.4169	MENSEMINAGNLSEKTTNTVCVFTDDENIILNPQFEDGLNNWTGRGCKIAVHDSMANGKILPKSGKFFASASERTQSWNGIQQDITGRVQRKLAYEVTVLVRIFGNNVTTSDVRATLYVQKPDLREQYIGIANVQATDKDWAQMQGKFLLNDSPSKVVVYLEGPPAGTDILVNTFVIKHAAKTPPSTPPDFENVAFGVNIIENSNLDNGTTGWSPLGNCTLSVGTGSPRVIPPMARDSLGPHVPLSGRYILVTNRTQTWMGPSQTITEKLKLYLTYQVSAWVRISSGSHGPQNVGIAFSVDGQWANGGQTQVADGRWHEIGGSFRIEKQPSNSVFVYVQGPVPGVDLMVAGLQIFPVDRQARFRYLRNQTDKIRKRDVTLKFSGLDTSEYTFVKVKQIQNDFPIGSCINRTNIDNEDFVDFFVQHFNWAVFGNELKWYWTEPQKGNFNYKDADDMLDLCQKYKIDIRGHCIFWEVDSNVQQWIKSLNKNDLMTAVQNRLNGLLTRYKGKFRHYDVNNEMLHGSFYQDRLGKDIRANMFKIAHQLDPSATLFVNDYHVEDGCDTNSSPEKYMQQILDLQDQGAPVGGIGIQGHIDSPVGPIVCSALDKLATLGLPIWFTELDVSSTNEYVRGDDLEVMLREAMAHPAVDGVMLWGFWELFMSRENSHLVNAEGEINEAGRRFLDLKEEWLSHTHGHVDEQGEFNFRGFSGLYNVEIVTFEREICQTFVVDKGNSSLVISIDL*	742

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal2g1083	741	SUPERFAMILY	Galactose-binding domain-like	26	180	IPR008979	-
	Mal2g1083	741	Gene3D	-	23	180	-	-
	Mal2g1083	741	Gene3D	-	195	355	-	-
	Mal2g1083	741	PANTHER	GLYCOSYL HYDROLASE	17	741	IPR044846	GO:0004553\|GO:0005975
	Mal2g1083	741	Pfam	Glycosyl hydrolase family 10	397	655	IPR001000	GO:0004553\|GO:0005975
	Mal2g1083	741	PANTHER	ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN	17	741	-	-
	Mal2g1083	741	SUPERFAMILY	Galactose-binding domain-like	197	358	IPR008979	-
	Mal2g1083	741	ProSitePatterns	Glycosyl hydrolases family 10 (GH10) active site.	612	622	IPR031158	-
	Mal2g1083	741	SUPERFAMILY	(Trans)glycosidases	393	691	IPR017853	-
	Mal2g1083	741	ProSiteProfiles	Glycosyl hydrolases family 10 (GH10) domain profile.	389	684	IPR001000	GO:0004553\|GO:0005975
	Mal2g1083	741	Gene3D	Glycosidases	387	696	-	-
	Mal2g1083	741	Coils	Coil	667	687	-	-
	Mal2g1083	741	PRINTS	Glycosyl hydrolase family 10 signature	466	478	IPR001000	GO:0004553\|GO:0005975
	Mal2g1083	741	PRINTS	Glycosyl hydrolase family 10 signature	548	559	IPR001000	GO:0004553\|GO:0005975
	Mal2g1083	741	PRINTS	Glycosyl hydrolase family 10 signature	580	592	IPR001000	GO:0004553\|GO:0005975
	Mal2g1083	741	Pfam	Carbohydrate binding domain	28	165	IPR003305	GO:0016798
	Mal2g1083	741	Pfam	Carbohydrate binding domain	199	340	IPR003305	GO:0016798
	Mal2g1083	741	SMART	glyco_10	435	685	IPR001000	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal2g1083	Mal-Chr2	12585536	12588501	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal2g1083	22	741	Glycoside Hydrolase	AT1G58370	70.028	0.0	1093

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal2g1083	-		-	gmx:100784250	1297.72

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal2g1083	2	12585536	12588501	Mal2g1083	2	12585536	12588501	ECH
	Mal1g5650	1	132634054	132638992	Mal2g1083	2	12585536	12588501	PCT