Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5695 ATGGCATTTGCAGGAACAACTCAGAAGTGTATGGCTTGTAGCAAAACAGTTTATCTTGTTGATAAGTTAACTGCTGATAATAGAATTTTCCACAAAGCTTGTTTCAGATGTCACCACTGCAAAGGAACCCTCAAGCTAAGCAACTACAACTCTTTTGAGGGAGTTCTTTACTGCAGACCACACTTCGACCAACTGTTCAAAAGAACTGGTAGCCTTGAAAAAAGTTTTGAAGGTAACAAAGGATACATAACTGAATTTAAGATAAGGAAAAGAATGGCATTTGCAGGAACAACTCAGAAGTGTATGGCTTGTAGCAAAACAGTTTATCTTGTTGATAAGTTAACTGCTGATAATAGAATTTTCCACAAAGCTTGTTTCAGATGTCACCACTGCAAAGGAACCCTCAAGGTCCATGTTACAGTGAATGGAACTCCTTACCATAAGAGTTGTTTCAAATGCTGCCATGGAGGGTGTACTATTAGTCCTTCCAATTACATAGCACATGAGGGAAAACTCTACTGCAAACACCACCATATTCAACTGATCAAGCAAAAGGGAAATTTAAGCCAGCTTGAAGGTGACCATGAGAAAAATGCAATGAATGGGAAAATCAATGGCGAAGAAGTTGCAGCTGAAACTTGA 642 0.3879 MAFAGTTQKCMACSKTVYLVDKLTADNRIFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLEKSFEGNKGYITEFKIRKRMAFAGTTQKCMACSKTVYLVDKLTADNRIFHKACFRCHHCKGTLKVHVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGKLYCKHHHIQLIKQKGNLSQLEGDHEKNAMNGKINGEEVAAET* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5695 213 PANTHER OS06G0237300 PROTEIN 139 199 IPR045268 GO:0051015
Mal1g5695 213 ProSitePatterns LIM zinc-binding domain signature. 101 135 IPR001781 -
Mal1g5695 213 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 152 191 - -
Mal1g5695 213 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Mal1g5695 213 ProSiteProfiles LIM domain profile. 99 184 IPR001781 -
Mal1g5695 213 SMART lim_4 9 61 IPR001781 -
Mal1g5695 213 SMART lim_4 127 177 IPR001781 -
Mal1g5695 213 PANTHER OS06G0237300 PROTEIN 92 137 IPR045268 GO:0051015
Mal1g5695 213 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 92 137 - -
Mal1g5695 213 Pfam LIM domain 101 137 IPR001781 -
Mal1g5695 213 Pfam LIM domain 10 64 IPR001781 -
Mal1g5695 213 Pfam LIM domain 139 180 IPR001781 -
Mal1g5695 213 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 79 - -
Mal1g5695 213 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 139 199 - -
Mal1g5695 213 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 93 126 - -
Mal1g5695 213 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Mal1g5695 213 PANTHER OS06G0237300 PROTEIN 1 79 IPR045268 GO:0051015
Mal1g5695 213 Gene3D Cysteine Rich Protein 137 213 - -
Mal1g5695 213 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Mal1g5695 213 CDD LIM1_SF3 6 68 - -
Mal1g5695 213 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Mal1g5695 213 Gene3D Cysteine Rich Protein 87 136 - -
Mal1g5695 213 Gene3D Cysteine Rich Protein 4 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5695 Mal-Chr1 133550834 133558952 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Mal1g5695 LIM 2e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5695 K09377 - gmx:100499947 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5695 1 133550834 133558952 Mal1g5695 1 133550834 133558952 ECH