Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5654 ATGGGTAGAGCTCCTTGTTGTGACAAAGCAAACGTGAAGAAAGGTCCATGGTCTCCAGAAGAAGATGCTAAACTCAAATCTTACATAGAACAACATGGTACTGGTGGTAACTGGATTGCTCTCCCACAAAAAATTGGTTTGAAGCGTTGTGGAAAGAGTTGTCGTCTAAGGTGGCTTAACTATCTTCGCCCTAATCTCAAACATGGTGGTTTCTCCGAAGAAGAAGATAACATTATTTGCAGCCTTTACATTAGTATTGGAAGCAGGTGGTCGATAATTGCAGCTCAATTGCCAGGAAGAACAGATAATGACATAAAGAATTATTGGAACACAAGGTTGAAAAAGAAGCTTTTGGGGAAACACCGTAAAGATCAACAACAACAAGCACGGAATAGAGGCAATAACGGTGTTATTGTTAAGCAAGAAAGCAATAATAATAGAGTGATGAGTAGTAGTGAATTTTCCTTATCAAATTTGGTTCAAGAACAACCATATTTGCCACATATCATGCAACCTTTGCTATCAACACCCCCACCTCCACCACCATCAATGTTGGCATACACAAACCAAGGCTTCAATGATCAAGATTCTATTAGAAAACTACTTATGAAACTTGGAGGAAGATTTTCAGGTGATTATCATCCTAATACTACTTTTGATGGTTTGAATCTTCAATTTTCAAATGCTACTACTTCAACTCATGAACAAGTTTATGATCAAGAACATGTGGGATCTTCTACTTGTGTTAATTCTTCCAATGATAACAATAACAACAACAACAACAACAACAATCAAGTACAATTTGCAACAAATGGTCAATACTTTGACTCGGTGCAAGAAGAACAAGGCAAATTCATTCCAGAAATTGATCATATGGTATCTACTAATTATCCACCAAGATTTGATGGGTTGGAATTCTTTTATGGTGAAGAAGACTTGAATATTGATAATAATAAGATACAAAGTTCTAGTACTAATTGGAGTGAAGCTACCACTTCAAGTTATCATCATCCTCTTGATTTGTGA 1026 0.3635 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKDQQQQARNRGNNGVIVKQESNNNRVMSSSEFSLSNLVQEQPYLPHIMQPLLSTPPPPPPSMLAYTNQGFNDQDSIRKLLMKLGGRFSGDYHPNTTFDGLNLQFSNATTSTHEQVYDQEHVGSSTCVNSSNDNNNNNNNNNNQVQFATNGQYFDSVQEEQGKFIPEIDHMVSTNYPPRFDGLEFFYGEEDLNIDNNKIQSSSTNWSEATTSSYHHPLDL* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5654 341 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Mal1g5654 341 CDD SANT 71 113 IPR001005 -
Mal1g5654 341 MobiDBLite consensus disorder prediction 322 341 - -
Mal1g5654 341 MobiDBLite consensus disorder prediction 119 144 - -
Mal1g5654 341 Gene3D - 7 68 - -
Mal1g5654 341 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Mal1g5654 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Mal1g5654 341 PANTHER OS09G0431300 PROTEIN 1 330 - -
Mal1g5654 341 CDD SANT 16 62 IPR001005 -
Mal1g5654 341 MobiDBLite consensus disorder prediction 129 144 - -
Mal1g5654 341 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Mal1g5654 341 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Mal1g5654 341 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Mal1g5654 341 MobiDBLite consensus disorder prediction 242 267 - -
Mal1g5654 341 Gene3D - 70 140 - -
Mal1g5654 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Mal1g5654 341 PANTHER TRANSCRIPTION FACTOR MYB36-LIKE 1 330 - -
Mal1g5654 341 SMART sant 67 115 IPR001005 -
Mal1g5654 341 SMART sant 13 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5654 Mal-Chr1 132732694 132734144 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5654 1 204 MYB Transcription Factor Family AT3G49690 62.255 1.49e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal1g5654 Myb_DNA-binding 2.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5654 K09422 - gmx:100800290 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5654 1 132732694 132734144 Mal1g5654 1 132732694 132734144 ECH
Mal1g5654 1 132732694 132734144 Mal2g1086 2 12663913 12665191 PCT