Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5652 ATGGAGGAATACACTAATAATCATCATCTAAGAGAAAATCCAAATCAAAATTCAAGGCCAAATTTCTTGTACTCTATTGCTAGTGGAAACCACCAACAACACCATAACCATAATCAAATTCCAATGAATACCTTTCATAATCTTCAATCTAGTGGATCAGATAATTGTTTTCAATCTGATCAACTGCAACAACACACTCAAGTGAAAACTGAAGCAAATAATAGTACTACTTCACAACTTCACACTCCTATTTTTCATTACCCAGCTTTAATGAGAACAAATATTATTCCACACACCAATATTATGCATAATCATCATCAAGGAGGAGGATGTAGCCCAAGCAGTTCTAGTGGTGAAGCTGAAGCTATAAAGGCTAAAATCATTGCTCATCCTCAATATTCTAGTCTTTTACAAGCTTACATGGATTGTCAAAAGATTGGAGCTCCACCTGAAGTGATGGCACGTTTGGTTGCGGCTAGGCAAGAGTTTGAAGCAAGGCAAAGATCTTCAGTTAATTCTAGGGAAAATTCCAAAGATCCAGAACTAGACCAATTCATGGAAGCATATTATGACATGCTTGTGAAGTACAGAGAGGAATTAACAAGACCTATACAAGAGGCTATGGATTTCATGAGGAGAATTGAAACTCAGCTTAATACACTTTGCAATGGACCCGTTCGAATTTTCCCTGATGATAAAAATGAAGGCGCTGGTTCATCAGAAGAGGATCAAGAGAATAGTGGTGGAGAAACAGATCAACTTCCAGAGATTGATCCTCGAGCAGAAGACCGTGAATTGAAAAATCACTTGCTGAAGAAATATAGTGGTTACTTAAGTAGTCTTAAGCAGGAACTTTCCAAGAAGAAAAAGAAAGGAAAATTGCCTAAAGAGGCTAGACAAAAGCTACTTAATTGGTGGGAATTGCATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTAGCATTGGCTGAGTCAACAGGTTTGGATCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGAGGCATTGGAAACCATCAGAAGACATGCAGTTTATGGTGATGGATGGACTGCATCCTCAGAGTGCAGCTCTTTATATGGATGGTCACTACATGGCTGATGGTCCCTACCGTCTAGGTCCATGA 1152 0.3854 MEEYTNNHHLRENPNQNSRPNFLYSIASGNHQQHHNHNQIPMNTFHNLQSSGSDNCFQSDQLQQHTQVKTEANNSTTSQLHTPIFHYPALMRTNIIPHTNIMHNHHQGGGCSPSSSSGEAEAIKAKIIAHPQYSSLLQAYMDCQKIGAPPEVMARLVAARQEFEARQRSSVNSRENSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNTLCNGPVRIFPDDKNEGAGSSEEDQENSGGETDQLPEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSAALYMDGHYMADGPYRLGP* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5652 383 Pfam ELK domain 265 286 IPR005539 GO:0003677
Mal1g5652 383 Pfam Homeobox KN domain 305 344 IPR008422 GO:0003677|GO:0006355
Mal1g5652 383 ProSiteProfiles 'Homeobox' domain profile. 285 348 IPR001356 GO:0003677
Mal1g5652 383 SMART KNOX1_2 121 165 IPR005540 GO:0003677|GO:0005634
Mal1g5652 383 Pfam KNOX2 domain 177 222 IPR005541 GO:0003677|GO:0005634
Mal1g5652 383 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 11 375 - -
Mal1g5652 383 MobiDBLite consensus disorder prediction 1 23 - -
Mal1g5652 383 Gene3D - 282 355 - -
Mal1g5652 383 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 11 375 - -
Mal1g5652 383 ProSiteProfiles ELK domain profile. 265 285 IPR005539 GO:0003677
Mal1g5652 383 CDD homeodomain 297 349 IPR001356 GO:0003677
Mal1g5652 383 ProSitePatterns 'Homeobox' domain signature. 323 346 IPR017970 GO:0000981|GO:0006355
Mal1g5652 383 MobiDBLite consensus disorder prediction 225 259 - -
Mal1g5652 383 SUPERFAMILY Homeodomain-like 286 360 IPR009057 -
Mal1g5652 383 SMART ELK_2 265 286 IPR005539 GO:0003677
Mal1g5652 383 SMART HOX_1 287 352 IPR001356 GO:0003677
Mal1g5652 383 Pfam KNOX1 domain 122 164 IPR005540 GO:0003677|GO:0005634
Mal1g5652 383 SMART KNOX2_2 172 223 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5652 Mal-Chr1 132676972 132681937 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5652 53 383 Homeobox Transcription Factor Family AT4G08150 70.882 8.50e-156 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mal1g5652 KNOX2 2.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5652 - - gmx:100800822 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5652 1 132676972 132681937 Mal1g5652 1 132676972 132681937 ECH
Mal2g0660 2 7726385 7726900 Mal1g5652 1 132676972 132681937 ECH