Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3072 ATGGGCACCAAACTCTACAAGATCAGCTCCATAGATTGGAAACCTTCACCCGTCATAGCCCTAGCCACCAGCCTCGACGGCCTTCGCGTCGCCGCTTCACGCCAAGACGGTTCCTTAGAGCTCTGGCTCGTTTCTCCTGGCTCCATCGGTTGGCACTGTCAATTGACGATTCACGGTGACCCTAATCGGAGAGCTTCGTCGCTTATTTGGTGCCCTGATGTCTCCAATGGGATGCAGTGTGGTCGGTTGTTCTCTTCCAACATTGATGGCTCGGTTACTCGCTGGGATCTTTTCCACTTGAAGCAGACGACGGTGCTAGATTCTGATGGCGTCTCGATCTGGCAAATGGCTGCAGAGCCGCTGAAAAGTGACATGCCAAATGATGAGAAGATGGGTGATCATATGGGGAATGGGTACGTGAGTGAATTGCAAGGTTCGGATGAGCATGGGGACAGTGAAAGTGATTCAGGTTCTGATTCAGATTCTGATTCACCCAAGCAACCTGAGTATCCACGTGTAGCGATTGGTTATGATGATGGGGCTGTGAGAATTTATGCCATTTCTGATGCTGATGAATTTATATATGTAAAGTCCTTCCGTCGGGTCAAAGGACGGGTTTTAAGTGTGGCTTGGAGTACAGATGCTAAATTCATATATTCAGGCAGTAGTGATGGGATAATACGGTGCTGGGATGCTGTATTGGGTAATGAAATCTATAGAATTACAGCTGGACTTGGAGGTTTGGGCAGCGGACCGGAGCTCTGTATATGGTCATTATTGTCTTTAAGGTCTGGGACACTTGTTAGTGCAGACAGCAGTGGTAGCGTCCAGTTTTGGGACAGCCAACATGGAACTCTATTGCAAGCTCATTCTTTACACAAGGGAGATGTTAATGCTCTGGCAGCAGCCCCTAGTCATGATAAGGTGTTCTCTGCTGGTTCTGATGGCCAGGTTATTCTGTATAAGCTGTCTGGTCAGTCATCAGCATCTGAGGATAGCAGTTCCTTGAAAATGATGAAGAAATGGATCTATGTTCATTATATAAGGGCTCATACCCATGATGTCAGAGCCTTGACTGTTGCCGTACCGATTAGTCAAGAAGATTCTTTGCCAGATGAGAGGATTAAAAGAGCTCGACGTGAGGGAAAGCCCATTGAATATAGTTACCATAAGTGGGCTCATTTGGGAGTTCCTATGCTTATATCAGCTGGAGATGACACAAAACTCTTTGCATACCCTGTAAAAGAATTTACAAAGTTTTCTCCGCACGATATCTGTCCCGCGCCTCAGAGAACACCCATTCATCTAGTGCATGATACCGCCTTCAACCAATCACCAATGCTATTGGTCCAGTCTTTACATTGCATAGATGTTCATTTGCTGCAACTAAAAGATGTTCACACAGCTGGAGCCTATGCGAAGACTGAGATACTTGCCCGAGTGAAGAGCAAGGGATCTCGTAAGATAATTTGCAGCTCCATTGCTAATTCTGGGGCGCTTTTTGGGTACTCAGATCATGTGAAGCCTAGTCTTTTTGAATTGAAGAGGAGTGAAGGTGGGAAAATAACATGGAGTGTTAGTAGAAGGAAACTTCCTCAGAGATTACCATTTGCCCATTGTATGATTTTTACTCACGACTCCTCTTGGTTGATTGTAGCTGGGCATGATAGGAAGATATATGTTGTGGATGTCAGTTGCTCGGAACTAGTGCATACTTTTACACCCTCTCGTGAATTGAAAGACGAAGAATTACCTCCAACCGAACCTCCTATAACAAGATTATTTACTAGTTCGGACAGGCAGTGGTTGGCAGCCGTGAACTGCTTTGGGGATATATATGTATTTAACTTGGAGATACTAAGGCAACACTGGTTCATTTCAAGATTAGATGGTGCCTCTGTAACAGCTGGTGGGTTTCTGCCCCAGAACAACAATATTCTGGTAGTTACGACTTCCTCAAATCAAGTGTATGTGTTTGACGTTGAGGTCAGACAATTGGGAGAATGGTCGATGCGGAATACATTTGTTCTTCCCAGGAGATACCAGGAATTTCCTGGTGAAGTTATTGGGCTTTCATTCCCTCCCTCAGAAACTTTAACGGCAGTTGTTTATAGTTCCAGGGCAATGTGCTTCATTGACTTTAAGTTGCCTGTGGAGCAAGATGATAGTGAGATGCTACTTACTCAGGATTCAGTGGGTAGGAATATACAAAATTTGAATGTTAAGAAAAGGACTAAATATAGGAAGAACTTCGAAGTGGTGCCATTAGAGAATCCTGTTTTATTTTTAACCCATATTAAGAACAATTCCTTTTTTATGATTGACAAACCCTGGTTGGAAGTGGTCAAAAGTTTGGAAGCTTCACCCGTCCACAGACATATTTTCGGGTCATAA 2394 0.444 MGTKLYKISSIDWKPSPVIALATSLDGLRVAASRQDGSLELWLVSPGSIGWHCQLTIHGDPNRRASSLIWCPDVSNGMQCGRLFSSNIDGSVTRWDLFHLKQTTVLDSDGVSIWQMAAEPLKSDMPNDEKMGDHMGNGYVSELQGSDEHGDSESDSGSDSDSDSPKQPEYPRVAIGYDDGAVRIYAISDADEFIYVKSFRRVKGRVLSVAWSTDAKFIYSGSSDGIIRCWDAVLGNEIYRITAGLGGLGSGPELCIWSLLSLRSGTLVSADSSGSVQFWDSQHGTLLQAHSLHKGDVNALAAAPSHDKVFSAGSDGQVILYKLSGQSSASEDSSSLKMMKKWIYVHYIRAHTHDVRALTVAVPISQEDSLPDERIKRARREGKPIEYSYHKWAHLGVPMLISAGDDTKLFAYPVKEFTKFSPHDICPAPQRTPIHLVHDTAFNQSPMLLVQSLHCIDVHLLQLKDVHTAGAYAKTEILARVKSKGSRKIICSSIANSGALFGYSDHVKPSLFELKRSEGGKITWSVSRRKLPQRLPFAHCMIFTHDSSWLIVAGHDRKIYVVDVSCSELVHTFTPSRELKDEELPPTEPPITRLFTSSDRQWLAAVNCFGDIYVFNLEILRQHWFISRLDGASVTAGGFLPQNNNILVVTTSSNQVYVFDVEVRQLGEWSMRNTFVLPRRYQEFPGEVIGLSFPPSETLTAVVYSSRAMCFIDFKLPVEQDDSEMLLTQDSVGRNIQNLNVKKRTKYRKNFEVVPLENPVLFLTHIKNNSFFMIDKPWLEVVKSLEASPVHRHIFGS* 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3072 797 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 199 231 - -
Lja5g3072 797 ProSiteProfiles Trp-Asp (WD) repeats profile. 199 240 IPR001680 GO:0005515
Lja5g3072 797 Gene3D - 254 474 IPR015943 GO:0005515
Lja5g3072 797 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 173 662 IPR011044 -
Lja5g3072 797 Gene3D - 516 788 IPR015943 GO:0005515
Lja5g3072 797 SMART WD40_4 50 96 IPR001680 GO:0005515
Lja5g3072 797 SMART WD40_4 674 713 IPR001680 GO:0005515
Lja5g3072 797 SMART WD40_4 528 563 IPR001680 GO:0005515
Lja5g3072 797 SMART WD40_4 192 231 IPR001680 GO:0005515
Lja5g3072 797 SMART WD40_4 242 280 IPR001680 GO:0005515
Lja5g3072 797 SMART WD40_4 4 43 IPR001680 GO:0005515
Lja5g3072 797 SMART WD40_4 283 322 IPR001680 GO:0005515
Lja5g3072 797 SMART WD40_4 622 660 IPR001680 GO:0005515
Lja5g3072 797 SUPERFAMILY WD40 repeat-like 9 116 IPR036322 GO:0005515
Lja5g3072 797 MobiDBLite consensus disorder prediction 146 166 - -
Lja5g3072 797 MobiDBLite consensus disorder prediction 122 172 - -
Lja5g3072 797 PANTHER WD REPEAT-CONTAINING PROTEIN PCN 4 796 IPR044622 GO:0010073|GO:0035266
Lja5g3072 797 Pfam WD domain, G-beta repeat 206 231 IPR001680 GO:0005515
Lja5g3072 797 Gene3D - 4 246 IPR015943 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3072 K14548 - gmx:100797494 1167.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3072 5 60200296 60207327 Lja5g3072 5 60200296 60207327 ECH