Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3071 ATGGTGGTGTTGTCAGAGATTGAGGAAGATGAACTTGACGAAGAACCAGGCGAGGTCATTGAATCCGCACCGCCCCAAAAGCTTGGCGAAGAGAGGAAACTCAGTGGCGACCCGCCTCTCACAAAGAAGCTCCTCAAACGCGGACACGGTTGGGAAACCCCTGACATCAACGACCAAGTCACTGTTCACTATGTTGGAACTTTCCTTGATGGAACAAAGTTTGTCTCCACTAGAGATTCTGATAAGCCTGAGACATTTACTCTTGGCCAAGTTCATGTGCATGCTGTGTTGGATCATGGGATTATCACAATGAAGAAGGGAGAGGTAGCTTTGTTCGCGGTGCCTGATGATGGCTCAACCTCGGTTATGCAGTTTGAGTTGGAACTCATTTCGTGGATCAAGGTGGTGGATGTTTTCAAAGATGGTGGGATCATCAAGAAAATTATGGAGGCGGGGAGCGGGAACGAGCGGCCTAGTGATCTGGATGAAGTCCTTGTGAAGTATCATGTGGCGCTAGTTGATGGCACTGTTGTTGCAAAAACACAAGAAGAAGGGGTTGAATTTCATTTGAAGGATGGTCATCTTTTACCAAGATTGCCGAAAGTAATCATGACTATGACAAGGGGAGAGAAGGCTGAATTAATTGTTCAACCTCAATATGCCTTTGGGGAGAAAGGTAGAGAAGCTGGCAATGGGATCCATTCAATTCCCCCAAATTCAGTGCTGTGTGTTAATATTGAATTGGTATCCTTCAAGCCCGTCATAAATGTTACTGGTGACTCCATGGTGCTTAAGAAGATTCTGAAAGAAGGGGAAGGTGCTTTCATGGCCAATGAGGGTGCAAATGTTACTGTCAGCTACACAGCTATGCTAGAAGATGGCACTGTGTTTGAGAAAAGAGGAATTGATGACATAGAACCCTTGAAATTCATAACTGATGAGGAGCAAGTGATTACTGGTCTAGACCGGGAAGTGGCAACAATGAAGAAGGGAGAGAGGGCCATGATTAGCATACATCCTGATTATGCATTTGGAAATATGGAAGTCAGACAAGATTTTGCTACTGTGCCTCCAGGCTCAAATGTAGTGTATGACATTGAGATGATGGATTTTATTAAGGAGAAAGCACCATGGGAATTGAGTAGTAAGGAGAAAATTGCGGTAGCCGGGAGAAAAAAAGATGAAGGAAATTTACTATTCAAAGATGGAAAGTATCAGCGAGCAGGGAAGAAGTATGAAAAGGCGGCTGATTTTGTTAGTGAAGATGGATCCTTTGGCGATGATGAGCAAAATCTAGCTAAGGCATTGAGAGTGTCGTGCTGGTTGAACGGTGCAGCTTGTAGCCTTAAACTTAATGACTTTCCTGAAGCAATCAAACTATGTTCTCAGGTGCTTGATGTTGAGTTTCACAATGTGAAAGCTTTGTACAGACGAGCGCAAGCATATCTAGAGACTGGAGACTTTCTCTTGGCAGATTTGGACCTGAAGAAAGCTCTTGAGGTGGACCCACAAAACAGGGATGTACTGGTAATGAAGAAGAAATTCAAGCAAATTCAAGCTGACAGTGACAAGAAAGACGCTAAGTTGTATGAAAATATGTTTGCACATAAAATAAAGAAATTAAAGGTTGAAAAGGTGGAGCATAAGAAGGAAAGCGAAGAGGTTGTGAGAATGGAAATGGACAAAGTTGATGATAACGCAGCTCCTCCTGATGGTGTGGTTTAG 1725 0.4354 MVVLSEIEEDELDEEPGEVIESAPPQKLGEERKLSGDPPLTKKLLKRGHGWETPDINDQVTVHYVGTFLDGTKFVSTRDSDKPETFTLGQVHVHAVLDHGIITMKKGEVALFAVPDDGSTSVMQFELELISWIKVVDVFKDGGIIKKIMEAGSGNERPSDLDEVLVKYHVALVDGTVVAKTQEEGVEFHLKDGHLLPRLPKVIMTMTRGEKAELIVQPQYAFGEKGREAGNGIHSIPPNSVLCVNIELVSFKPVINVTGDSMVLKKILKEGEGAFMANEGANVTVSYTAMLEDGTVFEKRGIDDIEPLKFITDEEQVITGLDREVATMKKGERAMISIHPDYAFGNMEVRQDFATVPPGSNVVYDIEMMDFIKEKAPWELSSKEKIAVAGRKKDEGNLLFKDGKYQRAGKKYEKAADFVSEDGSFGDDEQNLAKALRVSCWLNGAACSLKLNDFPEAIKLCSQVLDVEFHNVKALYRRAQAYLETGDFLLADLDLKKALEVDPQNRDVLVMKKKFKQIQADSDKKDAKLYENMFAHKIKKLKVEKVEHKKESEEVVRMEMDKVDDNAAPPDGVV* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3071 574 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 277 368 IPR001179 GO:0003755
Lja5g3071 574 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 52 115 IPR001179 GO:0003755
Lja5g3071 574 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 156 249 IPR001179 GO:0003755
Lja5g3071 574 SUPERFAMILY FKBP-like 137 252 - -
Lja5g3071 574 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 280 372 IPR001179 GO:0003755
Lja5g3071 574 MobiDBLite consensus disorder prediction 25 39 - -
Lja5g3071 574 ProSiteProfiles TPR repeat profile. 472 505 IPR019734 GO:0005515
Lja5g3071 574 MobiDBLite consensus disorder prediction 554 574 - -
Lja5g3071 574 SUPERFAMILY FKBP-like 36 132 - -
Lja5g3071 574 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 57 117 IPR001179 GO:0003755
Lja5g3071 574 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 161 252 IPR001179 GO:0003755
Lja5g3071 574 MobiDBLite consensus disorder prediction 1 18 - -
Lja5g3071 574 Gene3D - 135 252 IPR046357 GO:0003755
Lja5g3071 574 Gene3D - 32 134 IPR046357 GO:0003755
Lja5g3071 574 SUPERFAMILY FKBP-like 258 388 - -
Lja5g3071 574 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 263 372 - -
Lja5g3071 574 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 371 546 - -
Lja5g3071 574 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 259 - -
Lja5g3071 574 SMART tpr_5 438 471 IPR019734 GO:0005515
Lja5g3071 574 SMART tpr_5 389 422 IPR019734 GO:0005515
Lja5g3071 574 SMART tpr_5 472 505 IPR019734 GO:0005515
Lja5g3071 574 PANTHER PEPTIDYLPROLYL ISOMERASE 5 259 - -
Lja5g3071 574 Gene3D - 253 375 IPR046357 GO:0003755
Lja5g3071 574 SUPERFAMILY TPR-like 391 534 IPR011990 GO:0005515
Lja5g3071 574 MobiDBLite consensus disorder prediction 1 39 - -
Lja5g3071 574 Gene3D Tetratricopeptide repeat domain 376 532 IPR011990 GO:0005515
Lja5g3071 574 PANTHER PEPTIDYLPROLYL ISOMERASE 263 372 - -
Lja5g3071 574 PANTHER PEPTIDYLPROLYL ISOMERASE 371 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3071 Lja-Chr5 60191944 60198049 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3071 27 535 Calmodulin-binding Proteins AT3G25230 52.107 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3071 K09571 - gmx:100798382 825.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3071 5 60191944 60198049 Lja5g3071 5 60191944 60198049 ECH