LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja5g3062	ATGGAGAAGATCTGCGTCGCCGTTCGAGTTCGTCCTCCGGTTTCCGGCGACTCCTCCGCCGGAAGCTTCTGGAAGGTCGAAGAGAACCGCATCTCTCTTCACAGGATCCATGGCACTCCACTCCCTCCCGCTTCTTATGCTTTCGATCATATATTCGATGAAAATAGCACGAACACGAGTGTCTATGAACACCTCACCAAAGATATCATCCTCGCTGCGCTTAATGGCTTCAACGGAACTGCATTTGCTTATGGGCAGACTAGTAGTGGGAAGACTTTCACTATGAATGGTTCTGAAGCTGACCCAGGGGTGATTCCTCGTGCGGTCGAAGATGTGTTTGCGAAAATTGAGACGATGACTGATCGAGAGTTTCTGATTCGTGTTTCCTACATGGAGATCTATAATGAGGAAATTAATGATCTTCTTGTTGTTGAAAATCAGAAATTGCAAATTCATGAGAGTTTGGAGCGTGGAGTATTTGTTGCAGGGCTTCGAGAGGAAATTGTCAGTAATGCAGAACAAGTGCTAAACCTCATTCAAGCAGGGGAAGTTAACAGGCACTTTGGGGAGACAAATATGAACGTAAGGAGTAGCAGATCGCATACAATATTTAGAATGGTGATTGAAAGCAAAGGGAAGGAGGATGCCAATTCTTCCAATGATTGTTCAGTTAGTGATATTGTTCGAGTTTCAGTCTTGAATTTAGTTGATCTAGCTGGCTCTGAGAGGATTGCAAAGACTGGAGCTGATGGAGTACGTTTAAAAGAAGGAAAGTACATTAACAAGAGCTTGATGGTTCTGGGAAATGTTATTAACAAACTAAGTGAAGGTTCAAAGCAAAGGGGGCATATCCCGTATCGTGATAGTAAATTAACTCGCATACTCCAACCTGCTCTTGGTGGTAATGCCAAAACGTCCATTATTTGCACGGTAGCACCAGAAGAGGTCCACATTGAAGAAACAAAGGGAACTCTTCAGTTTGCTAGTAGGGCCAAGCGCATCACGAATTGTGTTCAAGTGAATGAGATTTTGACAGATGCAGCCTTGTTAAAGAGGCAACAATTAGAGATAGAAGATCTACGTAAAAAACTTCAGGGTTCCCATGCTGGGGTTCTCGAGCAAGAGATTCTTAAACTCAGGAACGATTTGCTCAAGTATGAAATGGAGCGTGGGAAGCTTGAAATGGAACTGGAAGAGGAGAGGAAGTCTCGTGATCAGTTGATTAGAGAGCAACGGATGAAAATTGAAAATTCCAGATCTAGTACTATATCTTTTTCAGACTCTGGAATGAACGACAGTCAGGGAACTGGATCTTTGAGTCACAGATTTACAGAAGAGTTCAGTGAAATTAATAGTACATCACAAGGAGATATTTTTAGATCTCCCTGTTTGAAGACACCTCCCAGTACTTTTGTTGCCAGGCGACCAAAGAATTCAACTTTGCCAGATTTTAGCCCTCCACCAGTTGCTTTCAGCAATGTGGCTGATGAAGATATGTGGTTGAAAATGAACAATGGTTACGTTGCGGATCTTGATTCACTTCAAACTACTCCCTTTCGAAAAGTTCAATCATTCCCAGCAAGTGAAACAACTCCGGGTTGTATAAATCAAATTGAGAAGTATGAACGAGAGGTTCAAGATTTGAGGAGACAACTGGAACTTGCTAATGAAAAGATAAATGAACTGGAGAGAAAGCATTCAGAGGAAGTACCATCAAACAAGCAATTAATCGGTGAGAGACCTGAACATCAACAAGAAACACAACTAATTCAAGAATTGCCTCTAAGATTATCTGAATCTGTGGAAAACTTCAAAGATAGCTTTGAGGAGGTTTTATCAGTAATGCAGAAAATTGCATCTGGTGGCAAATTGTCTACTGCGAAGATGCTTTCAACCATGAGTGAAGTTGGTGCACAGCTTTTTGAAACTTTGGAAGCTAACTGTAGAATGAGTACGAACAGTGAAAGGAGGTCTTCCACGGGGAACCATGCTTTAATCCATGAACAGAAGAAAGACTTTCATGAGAGGATGAATAATATAATTACATCACTGGAGATATCAGAGAACTCAACAACAAGAGAGCAAGAGACAAATTCTTCGTGCAGCTGTGAATACAAGGTCTCTGATTTGGGAGGAGAAACTGCTTACTCAAAGAATGATTTAACTGAAAGATGTGAAAGCCTAGAAAGGGAGTTACTACTTTTGAAGGATGAAAGAGACTCTTTGCTGCTGAAGTTCTCTGAATCATCTGAGAAACTTGCAATGGTTTCAAGGCAAAAGGAAAAGGCTTTGAAAGATTTATATACTGAAGTTCAGAGAAGGGAAAATCTAGAAGGGGAGGTTAAGCAGTTTTCTGCAGCTTTCGCCTGTCGTCAGAAATCACTCATTTCATTCCAGAGTGAAGTTAAGACCAAATTTGAGAAATTGAGAGCTCAGACACCAATTCCAGTGCCCAATTCTTTTGGTTATTAG	2472	0.4134	MEKICVAVRVRPPVSGDSSAGSFWKVEENRISLHRIHGTPLPPASYAFDHIFDENSTNTSVYEHLTKDIILAALNGFNGTAFAYGQTSSGKTFTMNGSEADPGVIPRAVEDVFAKIETMTDREFLIRVSYMEIYNEEINDLLVVENQKLQIHESLERGVFVAGLREEIVSNAEQVLNLIQAGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKEDANSSNDCSVSDIVRVSVLNLVDLAGSERIAKTGADGVRLKEGKYINKSLMVLGNVINKLSEGSKQRGHIPYRDSKLTRILQPALGGNAKTSIICTVAPEEVHIEETKGTLQFASRAKRITNCVQVNEILTDAALLKRQQLEIEDLRKKLQGSHAGVLEQEILKLRNDLLKYEMERGKLEMELEEERKSRDQLIREQRMKIENSRSSTISFSDSGMNDSQGTGSLSHRFTEEFSEINSTSQGDIFRSPCLKTPPSTFVARRPKNSTLPDFSPPPVAFSNVADEDMWLKMNNGYVADLDSLQTTPFRKVQSFPASETTPGCINQIEKYEREVQDLRRQLELANEKINELERKHSEEVPSNKQLIGERPEHQQETQLIQELPLRLSESVENFKDSFEEVLSVMQKIASGGKLSTAKMLSTMSEVGAQLFETLEANCRMSTNSERRSSTGNHALIHEQKKDFHERMNNIITSLEISENSTTREQETNSSCSCEYKVSDLGGETAYSKNDLTERCESLERELLLLKDERDSLLLKFSESSEKLAMVSRQKEKALKDLYTEVQRRENLEGEVKQFSAAFACRQKSLISFQSEVKTKFEKLRAQTPIPVPNSFGY*	824

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja5g3062	823	PANTHER	CENTROMERE PROTEIN E	2	433	-	-
	Lja5g3062	823	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	3	365	IPR027417	-
	Lja5g3062	823	SMART	kinesin_4	1	342	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Lja5g3062	823	ProSitePatterns	Kinesin motor domain signature.	231	242	IPR019821	GO:0003777\|GO:0005524\|GO:0007018
	Lja5g3062	823	PANTHER	CENTROMERE PROTEIN E	2	433	-	-
	Lja5g3062	823	Coils	Coil	369	410	-	-
	Lja5g3062	823	MobiDBLite	consensus disorder prediction	419	438	-	-
	Lja5g3062	823	ProSiteProfiles	Kinesin motor domain profile.	3	334	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Lja5g3062	823	CDD	KISc_CENP_E	3	334	-	-
	Lja5g3062	823	PRINTS	Kinesin heavy chain signature	232	250	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Lja5g3062	823	PRINTS	Kinesin heavy chain signature	284	305	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Lja5g3062	823	PRINTS	Kinesin heavy chain signature	191	208	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Lja5g3062	823	PRINTS	Kinesin heavy chain signature	76	97	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Lja5g3062	823	Coils	Coil	718	745	-	-
	Lja5g3062	823	Pfam	Kinesin motor domain	36	334	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Lja5g3062	823	Coils	Coil	538	565	-	-
	Lja5g3062	823	Gene3D	Kinesin motor domain	1	366	IPR036961	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja5g3062	Lja-Chr5	60038471	60046289	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja5g3062	2	396	Miscellaneous Gene Families	AT2G21380	45.137	1.28e-94	317

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja5g3062	K11498		-	gmx:100804944	1193.33

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja5g3062	5	60038471	60046289	Lja5g3062	5	60038471	60046289	ECH