Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3060 ATGGACAATAATTCTCAACCCCCCAGTATGCAGTTTCGGCAAGTCATTCAAGGTCAGCAAGGCCAACAATTTGTTCAAATGACTTCACAACAATTTGGACATGCAGGACATGCCATTGCTTCTTCAAATGTTGGGATGCCCGTCGTACAGGGTCAGCAATTGCAATATTCTCAACCAATGCAACAGTTGGCTCCAAGACCAATTCAGCCTGGTCATCCTGCTTCTTCATCACAGTCTATGCCCATGCCATATATCCAGAACAGGCCGCTTACATCTTTTCCACCACATTCACAGCAAACTGTTCCTCACCCAAGCAATCATATGCCTGGCTTGCCTGTTTCAGGAGCACCTACTCATTCTTCATACACCTTCACACCATCTTATGGTCAGCAGCAAAATAATGCTAATGCATTGGTCCAATACCAGCATCCGCCTCATACGCATGCACCTCCTGCAGGACAACCTTGGCTGCCTTCAGTGTCTCAGAGTGCTGCTGCTGTTACGTCAGTGCAGCCTGCTGGAGTGCAACCATCTGGTACTACATCAACTGATGCAGCAACTCCTGCTACGAACCAGTCGTCCGCTTCTGATTGGCAAGAACATACTTCTGCTGATGGAAGAAGATATTATTACAACAAGAGGACAAGACAGTCTAGTTGGGAGAAACCTTTGGAATTGATGTCACCTATTGAGAGGGCTGATGCATCAACTGTCTGGAAAGAATTTACTTCTTCAGACGGAAGAAAGTATTATTACAACAAGGTTACTCAGCAATCAACGTGGTCAATACCAGAGGAACTCAAGTTGGCTCGCGAGCAGGCACATAGAGAAATGAACCAGGGAATGCAGTCAGAAACAAGTGATACATCCAATACTGTTGTTTCCACTGCTGCAACATCAGCAGCCACAAATGCAGCTAGCTCCAACACTTCTCTGACATCTAGTGGGCTTGCTTTAAGCCCATCTCCAGTCACACCAATTGCAGCCACTGATCAGCAGCTGTTGGTTTCTGGATCCATAGTTACTTCAAACCCAACAGGAGTTGAACCAAGCAATGTGGCAACTATGAGCACTGTGCCTACAACAGTTGCAGGAAGCTCAGAAGTAGCTGCAAAGTTGCTTGATTCTAAAATGCCATCCATTATTGAAAATCAAGCATCTCAAGATCTTGGTTCTGTTAATGGAGCTTCTCTTCAAGATGTTGAGGAAGCCAAAAGAGGATTACCTGTTGTTGGAAAAGTTAATATAACTCCACCTGAGGAGAAAACTAATGATGATGAAACCTTGGTATATGCAAATAAGCAGGAAGCAAAAAATGCATTTAAAGCGTTTCTGGAATCTGTGAATGTTCAGTCAGATTGGACATGGGAACAGGCAATGAGAGAAATTATCAATGACAAAAGATATAATGCTCTAAAAACACTTGGTGAGCGAAAGCAAGCTTTTAATGAGTATTTGGGCCAAAGGAAGAAGCTAGAGGCTGAAGAGAGGCGCATGAAGCAGAAAAGAGCCCGCGAAGAATTCACAAAGATGTTGGAAGATTGCAAGGAACTTACATCATCTACAAGATGGAGCAAAGCTATAATTATGTTTGAAAATGATGAACGATTCAATGCTGTTGAAAGACCAAGAGATCGTGAAGATTTATTTGAAAGCTACTTGGTGGAACTAGAGAGAAAGGAAAAGGAAAAGGCCGCAGAGGAACAACGGCGGAATATAGCTGAATATAGGAAATTTCTGGAGTCCTGTGATTATGTGAAGGTGAACAGTCAATGGCGAAAAATCCAAGATCGGTTAGAGGATGATGATAGATACCTGCGACTTGAAAAACTTGACCGCTTGCTTGTTTACCAGGACTATATTCGTGACTTGGAGAAAGAAGAAGAGGAACAAAAAAGAATACATAAGGATCGAGTCCGTCGAGGTGAAAGGAAAAATCGTGATGCCTTTCGCAAGTTGCTGGAAGAACATGTTGCTGCTGGAGTCCTTACTGGTAGAACTCAATGGCGAGAATATTGCTTGAAGGTAAGGGATTTACCTCAATATCAAGCTGTTGCATCAAATACGTCTGGTTCTACTCCAAAAGATTTATTTGAGGATGTTGCTGAAGATCTTGAAAAACAGTATCATGAAGACAAGATACTCATAAAAGATATCATTAAGTCGGGCAAGGTCACTGTGGTAACTACATCAGTATTTGAGGACTTTAAGCTTGCTGTATTAGAAGAAGCTGCTTGCCAAAGAATATCTGAGATCAATTTGAAGCTTTTATTTGAAGAGTTGTTGGAGAGAGCTAAGGAGAAAGAGGAGAAAGAAGCCAAGAAGCGCCAACGCCTTGCTGATGACTTCACTAACCTGCTATATACATTCAAGGAGATTACAATTACTTCAAAATGGGAGGATTGCAAACCACTTTTTGAGGAAACACAAGAGTACAGATCAATTGGTGATGAGAGCTATAGTAGAGAAATTTTTGAGGAATACATTACATACTTAAAGGAGAAAGCTAAAGAGAAGGAACGGAAGCGTGAAGAGGAAAAGGTCAAAAAGGAAAAAGAAAGGGAAGAGAAAGAGAAACGGAAGGAGAAGGAAAAAAAAGAGAAGGATAGAGAACGTGAGAAAGAAAAGTCTAAGGAACGAATCAGGAAGGATGAAACAGATAGTGATAATGAAGACATAACAGACAGCCATGGTTACAAAGAGAAGAAAAAAGAAAAGGATAAGGAAAGGAAACATCGGAGAAGGCGTCAAAGCAGTATAGAGGATGTCGATTCTGAGAAGGACGAGAAAGAAGAGTCTAGAAAATCACGAAGGCATGGCAGTGATCGCAAAAAGTCGAGGAAGCATGCGAACTCTCCTGAATCAGACAATGAAAGCCGACATAAAAGACACAAGAGGGAGCATTGGGATGGTTCCAGGAGAACTGGAGGACTTGAGGAGCTTGAAGATGGGGAGCTCGGCGATGATGCAGAGGAGAAGAGTGCTTTGAAAGAATAG 2997 0.4231 MDNNSQPPSMQFRQVIQGQQGQQFVQMTSQQFGHAGHAIASSNVGMPVVQGQQLQYSQPMQQLAPRPIQPGHPASSSQSMPMPYIQNRPLTSFPPHSQQTVPHPSNHMPGLPVSGAPTHSSYTFTPSYGQQQNNANALVQYQHPPHTHAPPAGQPWLPSVSQSAAAVTSVQPAGVQPSGTTSTDAATPATNQSSASDWQEHTSADGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWKEFTSSDGRKYYYNKVTQQSTWSIPEELKLAREQAHREMNQGMQSETSDTSNTVVSTAATSAATNAASSNTSLTSSGLALSPSPVTPIAATDQQLLVSGSIVTSNPTGVEPSNVATMSTVPTTVAGSSEVAAKLLDSKMPSIIENQASQDLGSVNGASLQDVEEAKRGLPVVGKVNITPPEEKTNDDETLVYANKQEAKNAFKAFLESVNVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEDCKELTSSTRWSKAIIMFENDERFNAVERPRDREDLFESYLVELERKEKEKAAEEQRRNIAEYRKFLESCDYVKVNSQWRKIQDRLEDDDRYLRLEKLDRLLVYQDYIRDLEKEEEEQKRIHKDRVRRGERKNRDAFRKLLEEHVAAGVLTGRTQWREYCLKVRDLPQYQAVASNTSGSTPKDLFEDVAEDLEKQYHEDKILIKDIIKSGKVTVVTTSVFEDFKLAVLEEAACQRISEINLKLLFEELLERAKEKEEKEAKKRQRLADDFTNLLYTFKEITITSKWEDCKPLFEETQEYRSIGDESYSREIFEEYITYLKEKAKEKERKREEEKVKKEKEREEKEKRKEKEKKEKDREREKEKSKERIRKDETDSDNEDITDSHGYKEKKKEKDKERKHRRRRQSSIEDVDSEKDEKEESRKSRRHGSDRKKSRKHANSPESDNESRHKRHKREHWDGSRRTGGLEELEDGELGDDAEEKSALKE* 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3060 998 ProSiteProfiles FF domain profile. 501 556 IPR002713 -
Lja5g3060 998 Gene3D FF domain 433 489 IPR036517 -
Lja5g3060 998 Pfam WW domain 196 223 IPR001202 GO:0005515
Lja5g3060 998 Pfam WW domain 239 264 IPR001202 GO:0005515
Lja5g3060 998 SUPERFAMILY FF domain 636 711 IPR036517 -
Lja5g3060 998 Coils Coil 617 637 - -
Lja5g3060 998 MobiDBLite consensus disorder prediction 947 981 - -
Lja5g3060 998 Gene3D - 234 277 - -
Lja5g3060 998 Gene3D - 191 233 - -
Lja5g3060 998 SUPERFAMILY WW domain 197 231 IPR036020 GO:0005515
Lja5g3060 998 Coils Coil 482 505 - -
Lja5g3060 998 ProSitePatterns WW/rsp5/WWP domain signature. 198 223 IPR001202 GO:0005515
Lja5g3060 998 MobiDBLite consensus disorder prediction 142 202 - -
Lja5g3060 998 MobiDBLite consensus disorder prediction 156 200 - -
Lja5g3060 998 SMART FF_2 643 704 IPR002713 -
Lja5g3060 998 SMART FF_2 776 831 IPR002713 -
Lja5g3060 998 SMART FF_2 569 623 IPR002713 -
Lja5g3060 998 SMART FF_2 501 556 IPR002713 -
Lja5g3060 998 SMART FF_2 434 488 IPR002713 -
Lja5g3060 998 ProSiteProfiles FF domain profile. 569 623 IPR002713 -
Lja5g3060 998 PANTHER PRE-MRNA-PROCESSING PROTEIN 40B 5 987 - -
Lja5g3060 998 Gene3D FF domain 634 713 IPR036517 -
Lja5g3060 998 Gene3D FF domain 490 563 IPR036517 -
Lja5g3060 998 Gene3D FF domain 564 633 IPR036517 -
Lja5g3060 998 Pfam FF domain 781 828 IPR002713 -
Lja5g3060 998 Pfam FF domain 645 700 IPR002713 -
Lja5g3060 998 Pfam FF domain 572 620 IPR002713 -
Lja5g3060 998 Pfam FF domain 436 485 IPR002713 -
Lja5g3060 998 Pfam FF domain 503 553 IPR002713 -
Lja5g3060 998 Gene3D FF domain 770 844 IPR036517 -
Lja5g3060 998 SUPERFAMILY WW domain 226 267 IPR036020 GO:0005515
Lja5g3060 998 SUPERFAMILY FF domain 777 838 IPR036517 -
Lja5g3060 998 Coils Coil 550 579 - -
Lja5g3060 998 SMART ww_5 193 225 IPR001202 GO:0005515
Lja5g3060 998 SMART ww_5 234 266 IPR001202 GO:0005515
Lja5g3060 998 CDD WW 239 266 IPR001202 GO:0005515
Lja5g3060 998 SUPERFAMILY FF domain 493 563 IPR036517 -
Lja5g3060 998 SUPERFAMILY FF domain 561 630 IPR036517 -
Lja5g3060 998 ProSiteProfiles WW/rsp5/WWP domain profile. 233 266 IPR001202 GO:0005515
Lja5g3060 998 ProSiteProfiles WW/rsp5/WWP domain profile. 192 225 IPR001202 GO:0005515
Lja5g3060 998 Coils Coil 758 782 - -
Lja5g3060 998 SUPERFAMILY FF domain 425 488 IPR036517 -
Lja5g3060 998 MobiDBLite consensus disorder prediction 842 998 - -
Lja5g3060 998 Coils Coil 829 880 - -
Lja5g3060 998 MobiDBLite consensus disorder prediction 842 905 - -
Lja5g3060 998 MobiDBLite consensus disorder prediction 92 129 - -
Lja5g3060 998 ProSiteProfiles FF domain profile. 434 488 IPR002713 -
Lja5g3060 998 MobiDBLite consensus disorder prediction 914 938 - -
Lja5g3060 998 CDD WW 196 225 IPR001202 GO:0005515
Lja5g3060 998 ProSitePatterns WW/rsp5/WWP domain signature. 239 264 IPR001202 GO:0005515
Lja5g3060 998 ProSiteProfiles FF domain profile. 641 704 IPR002713 -
Lja5g3060 998 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 5 987 IPR039726 GO:0045292
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3060 Lja-Chr5 60013141 60034585 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3060 K12821 - gmx:100806019 1367.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3060 5 60013141 60034585 Lja5g3060 5 60013141 60034585 ECH