Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3056 ATGGATCTTGGGGTAGTGGGTTTGGATGGGTTGGTGGGTTCAGAAACAGGATTTGTTTCTCTTGCTTCAGATCCTGAGGCAAAGCACAAGTGGTACGGATCTGGGTTCCTTAAGCAAGAGAGATCTGCCACAACTGAAGATGATGACTTGAGAAGCTCCAAACTTGCCAAGACTAATAATGATGACAAAGCAATGCAGCAGTTTCAGTTGCAGCAGCAGAACAAGAACTCTTCTTCATCATCACTGAGATCTAATGCTACTTTGTTTTCTGATGGCCATCACCAGCAACACATGCTGAGCTTCTCTTCTCCAAAGCTTGAAACTTATTCACTAGACAAGAACAACCCAAATGCCACATTGTCTTATTCTTATCACCCTTTGTCTAGTTACAGCAGAAACACAGGTTACAGTTCAGGAAGCATGCATGGGGCTTTTGCTGGTACCAGAGGACCATTCACTCCATCTCAATGGATGGAGCTTGAACACCAAGCCTTGATCTACAAGTACATCACAGCAAATGTCCCTGTACCTTCACATCTTCTCATCCCCATCAAAAAAGCACTTGAGTCTGCTGGCTTTTGCAATTTCTCTACTGGAATCCTCAGACCCAATGCATTGGCATGGGGAGGTTTCCATCTGGGATTCTCCAACAACACTGATCCTGAGCCAGGAAGGTGTAGGAGGACAGATGGGAAGAAATGGCGGTGCTCGAGAGATGCCGTTGTCGATCAGAAGTACTGCGAGCGGCACATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCAGGCCATGCCGTTACTGCCACCACCACTACAACCACCAATGCGAATGCTGCTACTCCAAATGGTTTGAAACTCAATGCTTCCTCCATTGTGGTGCCCGGCAACAGTGCTTGCAACAACCTTACCTTTGCAAACCAGGAGCACAAGAATATGCAGAACCCTCTTTCTGCAGATAACACTTCAGCCTCCAACACCATCAACAGGATGTTCATGAATTGCAAAGAGAATGATAAGGCTAGTGAGAGGATGCAGGATGGCCCTGTCCTTCCAATGCTACCTCCTACCCTTGAGCTGAAACCGAAGGAAAACAACAATCCCTTCATGATTCAAAAACCTGATTTTCCTTATGAGGAACCCTCAAGGAACAGTGAGTTTGGTTTTGTCACTTCTGATTCCTTGCTTAACCCTTCACAGAAAAGCTCCCCCACAACCACAACCTTGCTTAGTAGCAGAACCTCTGCAGATTCTTCACAACAGAACACTGGTTCCCAACATCCCCTCAGGCATTTCATTGATGACTGTCCTAAATCACAATCTGATCATCATCATCATCAACAACATCATCATCGTTCTGGTGTTTCGTGGACAGAGCTTGATCACATGCAGTCAGATAGGACTCAGCTTTCAATTTCCACTCCAATAACCTCCTCAGATCACTTCTTGTCATTCAATTCCTCACCCTCCAATGAGAAGCTCACACTCTCACCTTTAAGGCTATCAAGGGAGTTAGACCCAATTCAAATGGGTTTGGGTGTTGGAAGTGCTGCTATCAATGAATCAAATAACACTACTACTACTAGGCAAGCAACTAATTGGATCCCAATTACATGGGAAAGTTCAATGGGGGGTCCTCTTGGAGAGGTTCTGCATCTTAGTACTAACAACAATGTAAGTGATCACTGTGACAAAAACTCTTCTGATCTCAACCTCATGACTGATGGGTGGGACAATAGTCCTCCAATAGGGTCATCTCCTACTGGGGTCCTTCAAAAGACAGCATTTGGATCACTCTCTAATAGTAGTGCTGGGAGCAGTCCAAGAGCAGAGAACAACAAGACTCAAGAAGGGGCCAGCTTGTGCAATGATCTCCTTGGATAA 1893 0.4559 MDLGVVGLDGLVGSETGFVSLASDPEAKHKWYGSGFLKQERSATTEDDDLRSSKLAKTNNDDKAMQQFQLQQQNKNSSSSSLRSNATLFSDGHHQQHMLSFSSPKLETYSLDKNNPNATLSYSYHPLSSYSRNTGYSSGSMHGAFAGTRGPFTPSQWMELEHQALIYKYITANVPVPSHLLIPIKKALESAGFCNFSTGILRPNALAWGGFHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGHAVTATTTTTTNANAATPNGLKLNASSIVVPGNSACNNLTFANQEHKNMQNPLSADNTSASNTINRMFMNCKENDKASERMQDGPVLPMLPPTLELKPKENNNPFMIQKPDFPYEEPSRNSEFGFVTSDSLLNPSQKSSPTTTTLLSSRTSADSSQQNTGSQHPLRHFIDDCPKSQSDHHHHQQHHHRSGVSWTELDHMQSDRTQLSISTPITSSDHFLSFNSSPSNEKLTLSPLRLSRELDPIQMGLGVGSAAINESNNTTTTRQATNWIPITWESSMGGPLGEVLHLSTNNNVSDHCDKNSSDLNLMTDGWDNSPPIGSSPTGVLQKTAFGSLSNSSAGSSPRAENNKTQEGASLCNDLLG* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3056 630 SMART QLQ_2 150 186 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lja5g3056 630 MobiDBLite consensus disorder prediction 575 623 - -
Lja5g3056 630 MobiDBLite consensus disorder prediction 253 286 - -
Lja5g3056 630 ProSiteProfiles WRC domain profile. 220 264 IPR014977 -
Lja5g3056 630 MobiDBLite consensus disorder prediction 362 459 - -
Lja5g3056 630 MobiDBLite consensus disorder prediction 575 630 - -
Lja5g3056 630 MobiDBLite consensus disorder prediction 267 286 - -
Lja5g3056 630 PANTHER GROWTH-REGULATING FACTOR 9 23 619 - -
Lja5g3056 630 PANTHER - 23 619 IPR031137 GO:0005634|GO:0006351|GO:0032502
Lja5g3056 630 MobiDBLite consensus disorder prediction 388 431 - -
Lja5g3056 630 Pfam QLQ 151 184 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lja5g3056 630 Pfam WRC 221 263 IPR014977 -
Lja5g3056 630 ProSiteProfiles QLQ domain profile. 151 186 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3056 Lja-Chr5 59978092 59982800 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3056 1 600 GRF Transcription Factor Family AT2G22840 40.032 1.94e-99 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Lja5g3056 WRC 5.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3056 - - cam:101496763 807.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3056 5 59978092 59982800 Lja5g3056 5 59978092 59982800 ECH