Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3054 ATGAAGAAGTCCATGAATGATAGCAACACTGATGATGATGGGAACAATCATCATAACAACTGGTTGGGGTTCTCTCTCTCACCTCATATGAAAATGGAGGTTACTTCTTCTGCATCTCCCCATCATCATAGTCATCAAGATCATCATCATCACTACTATCATTCTGCAGCTTCTAGCAGCACTATTCCCTCAGACTTCTATCTGTCACATTCTGGAATCTGTTATGGTGTAGGGGAAAATAGCCCCTTTCATTATTCTCCTTTGGCTATGATGCCCCTCAAATCTGATGGTTCCCTTTGCATTATGGAAGCTCTCACCAGATCACAAACCCAAGTGATGGTGCCAACTTCATCTCCAAAACTTGAGGACTTCCTTGGTGGTGCAACTATGGAAGCTCAAGAATATGGAGGCCATGATGAAAGAGAGGCAATGGCTCTCAGCTTAGACAGCATCTACTACAACCATCACAATGCAGAACCTGATGCCAACAGAGACTTTCTTTCTGATCCCTTCAGGGAACAAGCTCATGACAATGTCCAATCTCACCCATTTTACTCAGCACTTGCTTGCCATGAAATGTTTCAAGCACCCTTGTTGGCAGAAGAAAGCAAGGAGCCCCACATTGCTCAAGTGGAAGAGGAAGATGACATTGCTTGCTTCAGAAACTGGGTGACTCCCAGAGAGTACTCTTCTATGGAGCAGAATCAAGTGAATAGTAGCAGCATTGGAGATGATGGTGGTGGTGGTGGTTCAGGTTCTGGTGGTGGTGGTGGTTCAGGTTCTGGTGGTGGTTCTGGTTCTGGTGTTGGTTGTGGGGAGTTGCAGTCACTGAGTTTGTCTATGAGTCCTGGTTCTCAGTCTAGTTGTGTCACGGTCCCGAGTCAGATCTCAGCTTCTGGGACTGGGACTGACTCGGTGGCCGTGGAAGCTAAGAAGAGAGGGTCTTCTAAGCTTGGTCAGAAGCAACCTGTTCATAGGAAATCCATTGACACATTTGGGCAGAGAACTTCACAGTATAGAGGTGTTACAAGGCATAGATGGACCGGTAGATATGAAGCACATTTGTGGGATAACAGTTGCAAGAAGGAAGGACAAACCAGGAAAGGAAGACAAGTTTATTTGGGTGGCTATGATATGGAAGAGAAAGCGGCGAGGTCCTATGATCTTGCGGCTCTTAAGTATTGGGGACCTTCAACACATATAAACTTCCCGCTGGAAAGTTACCAAACTCAACTTGAAGAAATGAAGAATATGACCAGGCAGGAGTATGTTGCCCACTTGAGAAGAAAGAGCAGTGGGTTTTCAAGAGGTGCTTCAATGTACAGAGGGGTGACAAGGCACCACCAACATGGAAGATGGCAAGCAAGAATAGGCAGAGTTGCAGGGAATAAAGACCTTTATCTTGGGACATTCAGTACTCAGGAGGAAGCAGCTGAAGCATATGATGTAGCTGCAATCAAATTTCGCGGCGTGAATGCAGTGACCAACTTTGTCATTTCCAGATACGATACTGAAAGAATCATAGCCAGCAACACCCTGCTTGCTGGGGAAGAAGCGAGGCGCAAAAGCAAAGAAATTGAACCAAGAACTGAGGCTAACAATGCTGTTGAAGGAGTTGTTGTTGAAGCTGTGAACAACAACAGCAATAATGGTTCATCAGTGTGGAAGAAGAAGATGGCATTTTATCATGAGGCCCCACAGCAACAAGAGTCAAGTAATTACAGAAACTCTGCTTTTTCTGTGTCCCTACAAGATATCATTGGGATTGACTCAGTAGGATCTAGCCAAGGCATGGTGGATGAGTCTACAAAGGTAATAGGGACCCATTTTTCAAACCCTTCCTCTCTGGTGACAAGTTTAAGCAGCTCAAGAGAATGCAGCCCTGACAAAACTGGTCCCACACTGCTTGGAGCAAAGATGGTTAGCAGCCCCTTTGGTGTTGGATCTTGGTTTCCCTCTCAAATGAGGCCTGGTGGTGTTGGTGATGCTATCTCAATGTCTCACTTGCCAGTGTTTGCAGCTTGGAATGATAGCTAG 2037 0.4566 MKKSMNDSNTDDDGNNHHNNWLGFSLSPHMKMEVTSSASPHHHSHQDHHHHYYHSAASSSTIPSDFYLSHSGICYGVGENSPFHYSPLAMMPLKSDGSLCIMEALTRSQTQVMVPTSSPKLEDFLGGATMEAQEYGGHDEREAMALSLDSIYYNHHNAEPDANRDFLSDPFREQAHDNVQSHPFYSALACHEMFQAPLLAEESKEPHIAQVEEEDDIACFRNWVTPREYSSMEQNQVNSSSIGDDGGGGGSGSGGGGGSGSGGGSGSGVGCGELQSLSLSMSPGSQSSCVTVPSQISASGTGTDSVAVEAKKRGSSKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARSYDLAALKYWGPSTHINFPLESYQTQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGVNAVTNFVISRYDTERIIASNTLLAGEEARRKSKEIEPRTEANNAVEGVVVEAVNNNSNNGSSVWKKKMAFYHEAPQQQESSNYRNSAFSVSLQDIIGIDSVGSSQGMVDESTKVIGTHFSNPSSLVTSLSSSRECSPDKTGPTLLGAKMVSSPFGVGSWFPSQMRPGGVGDAISMSHLPVFAAWNDS* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3054 678 Gene3D AP2/ERF domain 337 406 IPR036955 GO:0003700|GO:0006355
Lja5g3054 678 Gene3D AP2/ERF domain 440 499 IPR036955 GO:0003700|GO:0006355
Lja5g3054 678 MobiDBLite consensus disorder prediction 231 246 - -
Lja5g3054 678 SUPERFAMILY DNA-binding domain 439 499 IPR016177 GO:0003677
Lja5g3054 678 SMART rav1_2 338 410 IPR001471 GO:0003700|GO:0006355
Lja5g3054 678 SMART rav1_2 440 504 IPR001471 GO:0003700|GO:0006355
Lja5g3054 678 CDD AP2 439 497 IPR001471 GO:0003700|GO:0006355
Lja5g3054 678 PRINTS Ethylene responsive element binding protein signature 339 350 IPR001471 GO:0003700|GO:0006355
Lja5g3054 678 PRINTS Ethylene responsive element binding protein signature 480 500 IPR001471 GO:0003700|GO:0006355
Lja5g3054 678 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 17 676 - -
Lja5g3054 678 MobiDBLite consensus disorder prediction 231 326 - -
Lja5g3054 678 SUPERFAMILY DNA-binding domain 337 405 IPR016177 GO:0003677
Lja5g3054 678 MobiDBLite consensus disorder prediction 271 304 - -
Lja5g3054 678 ProSiteProfiles AP2/ERF domain profile. 440 498 IPR001471 GO:0003700|GO:0006355
Lja5g3054 678 ProSiteProfiles AP2/ERF domain profile. 338 404 IPR001471 GO:0003700|GO:0006355
Lja5g3054 678 MobiDBLite consensus disorder prediction 1 54 - -
Lja5g3054 678 CDD AP2 337 404 IPR001471 GO:0003700|GO:0006355
Lja5g3054 678 Pfam AP2 domain 338 396 IPR001471 GO:0003700|GO:0006355
Lja5g3054 678 Pfam AP2 domain 441 490 IPR001471 GO:0003700|GO:0006355
Lja5g3054 678 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 17 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3054 Lja-Chr5 59897411 59902041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3054 11 546 AP2-EREBP Transcription Factor Family AT4G37750 47.972 2.23e-146 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Lja5g3054 AP2 1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3054 K09285 - gmx:100798179 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3054 5 59897411 59902041 Lja5g3054 5 59897411 59902041 ECH
Lja5g3054 5 59897411 59902041 Lja1g4076 1 51785780 51790134 PCT