Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3052 ATGGGGGGTCAAGAAAATGCTATGAGGTTTCAACATGGAAAGGAGAGTATTATGAGTGCAAATGTTTCAGAAATGGCCATTAGTTCTGTGTCTTTGGCTAAACCTTCAGAGGCAGCTAATCCTTTTCTTGCTTCTCATGCTTGGGATCCCCTTGTTTCATTGAGTCAGGCTCAAACTTTTGGAGGGTCTTCAATGGTTTCTCATGGTGAGTATGCCAATGCAAATGCTTCTTACCCTCTTGTTATGGAGAATCAGGGAATGGGAAGCACCTCTCACCTTGTTCAATACATGTCTGACTCAAATCTTAGGGGCATGGTACCCAAGATTCCCTCCTATGGAAGTGGTAGTTTCTCAGAAATGGTTGGCTCCTTTGGCCAACATGGGTCTGGTGATATAACCAACACAGGGTATCCACAACACTATAATGCTGGCATTGAAAGGGTTCCAATTAATTGTGAGCACTCACAGGTTGAGGACTCAACCACTGAAGAGGGAGCCCCAGGATCTGCACCTAGTGGAAATAGAAGAAAGCGTGGGCTTGATCAAAATTCTACCTTCAATCCAAACAAGAATGCTGAGGGTGATGAACTGAAAGATTCTCCTGGGAAGATCTCTGATGGTTCAAAAGAACATGAAAAGAAACCAAAACTTGAGCGGAATGCTAGTGCAGATTTGAGAGGCAAGCAATCGGTGAAGCAAGCTAAAGACAACTCAGAAAGTGGAGAAGGTTCCAAAGATAATTTCATTCATGTTAGAGCTCGTAGAGGTCAAGCCACAAACAGTCACAGCCTTGCAGAAAGGGTAAGAAGAGAAAAGATTAGTGAAAGAATGAGGTTGCTTCAAGAGCTTGTTCCAGGATGCAACAAGATAACTGGCAAAGCAGTAATGCTGGATGAGATTATAAACTATGTGCAATCACTGCAGCAACAGGTTGAGTTTTTGTCCATGAAACTTGCTACTGTGAACCCAGAGATGAATTTTGATTTAGAGCGGATCCTATCTAAAGATATTCTCCAATCTCGCATAGGACATGGAATTGGTGGTTATGGTGCTGCTGGTGGTATCAGCTCCTCTCACCCATTCCCGAATACAAGTTTCCAGGGAAATCTAGCTGGCATGCCTGGTTCATCAACACAATACCCTCCTTTGCCACAGAATGTTTTGGACCATGAGTTCCAAAGCTTCTATGGAATGGGATATGATTCCAATACAGTACTTGACAATTCGGGACCTAATGGTAATAGACATTATCTTTTTAATTTTGATTATTTGTATAATCAATAG 1284 0.4237 MGGQENAMRFQHGKESIMSANVSEMAISSVSLAKPSEAANPFLASHAWDPLVSLSQAQTFGGSSMVSHGEYANANASYPLVMENQGMGSTSHLVQYMSDSNLRGMVPKIPSYGSGSFSEMVGSFGQHGSGDITNTGYPQHYNAGIERVPINCEHSQVEDSTTEEGAPGSAPSGNRRKRGLDQNSTFNPNKNAEGDELKDSPGKISDGSKEHEKKPKLERNASADLRGKQSVKQAKDNSESGEGSKDNFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPEMNFDLERILSKDILQSRIGHGIGGYGAAGGISSSHPFPNTSFQGNLAGMPGSSTQYPPLPQNVLDHEFQSFYGMGYDSNTVLDNSGPNGNRHYLFNFDYLYNQ* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3052 427 CDD bHLH_AtBPE_like 247 332 - -
Lja5g3052 427 Gene3D - 254 328 IPR036638 GO:0046983
Lja5g3052 427 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 255 326 IPR036638 GO:0046983
Lja5g3052 427 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 15 415 - -
Lja5g3052 427 MobiDBLite consensus disorder prediction 176 191 - -
Lja5g3052 427 Pfam Helix-loop-helix DNA-binding domain 260 308 IPR011598 GO:0046983
Lja5g3052 427 SMART finulus 263 313 IPR011598 GO:0046983
Lja5g3052 427 MobiDBLite consensus disorder prediction 155 267 - -
Lja5g3052 427 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 257 307 IPR011598 GO:0046983
Lja5g3052 427 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 15 415 IPR024097 GO:0006355
Lja5g3052 427 MobiDBLite consensus disorder prediction 192 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3052 Lja-Chr5 59862739 59866878 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3052 1 413 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 42.790 2.37e-78 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja5g3052 HLH 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3052 - - gmx:100801930 632.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3052 5 59862739 59866878 Lja5g3052 5 59862739 59866878 ECH