Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3047 ATGGTGGATCCTTGCATGCTCGGTTGGATCCTCTTCTCCGCTCTGAGCCTCTTCGCGCTGTACAGCGTGGTCTTCGCCGGGAACAGCCGTGGCTCCTCGCAGGGGAAGGCGGCTCCGCGTTCGGAGAACGTGACGACCGCCGCTGGAGAATGCGGATCGGAGAAACTTGACGGAGATGCCGATGTCATCATTGTTGGAGCTGGTGTTGCTGGCTCCGCCCTGGCTCACACTCTCGGCAAGGATGGACGTCGAGTGCATGTTATCGAAAGAGATCTGAGCGAGCCTGACCGAATTGTTGGGGAGTTGCTACAACCTGGGGGCTATCTCAAATTAATAGAACTGGGACTTGAAGATTGTGTGGAGCAAATTGATGCTCAACGAGTGTTTGGTTATGCTCTTTTCAATGATGGGAAGCATACTCGTCTCTCTTATCCCTTGGAGAAGTTTCACTCAGATGTTTCTGGCAGAAGCTTTCACAATGGCCGTTTTATTCAGAGGATGCGAGAGAAGGCTGCATCCCTTCCCAACGTACAATTGGAGCAAGGAACGGTCACTTCCTTACTTGAAGAGAAGGGAACAATAAAAGGTGTGCAGTACAAGAACAAAGATGGTCAGGAATTGACTGCATATGCTCCCCTTACCATTGTTTGTGATGGCTGTTTCTCAAACCTGCGTCGTTCTCTGTGTAACCCTAAGGTTGATATTCCATCTTGTTTTGTTGGCTTAGTTTTAGAGAACTGTGAACTTCCATGTGCAAATCATGGCCATGTCATACTGGGAGATCCTTCGCCAGTTCTCTTCTATCCTATAAGTAGCACAGAGATTCGCTGTCTGGTTGATGTACCAGGTCAGAAGGTTCCTTCTATTTCAAACGGTGAAATGGCAAAGTATTTAAAGACAGTGGTGGCTCCACAGATTCCTCCTCAGCTTTATGATTCCTTCATAGCTGCGGTGGACAAAGGAAACATAAGGACAATGCCAAACAGAAGCATGCCAGCAGATCCTCATCCTACACCTGGAGCCCTTCTGATGGGAGATGCATTCAACATGCGGCATCCACTAACAGGGGGCGGAATGACTGTTGCATTGTCTGATATTGTGGTACTGAGAAATCTTCTCAGGCCTTTGCGTGACATGAATGATGCACCCACACTTTGCAAATACCTTGAATCCTTTTATACCTTGCGCAAGCCTGTCGCATCAACCATAAACACACTGGCAGGAGCTCTTTACAAGGTTTTCTGTGCATCCCCTGATCAAGCAAGGAAGGAAATGCGCCAAGCTTGCTTTGATTATCTGAGCCTTGGAGGCCTATTCTCGCAAGGACCAGTCTCTTTACTTTCAGGATTAAACCCTCGTCCGTTGAGCTTGGTTCTCCATTTCTTTGCTGTTGCTGTATTTGGTGTCGGCCGTTTACTATTACCATTTCCTTCACCTAAGCGGATATGGATTGGAGCCCGGTTACTCACTGGTGCTTCTGGAATAATCTTGCCCATAATAAAGGCTGAAGGGATTCGTCAGATGTTTTTTCCTGCCACTGTTCCAGCTTATTACAGAACCCCCCCTGTTGCAGAACAGTGA 1581 0.4807 MVDPCMLGWILFSALSLFALYSVVFAGNSRGSSQGKAAPRSENVTTAAGECGSEKLDGDADVIIVGAGVAGSALAHTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFNDGKHTRLSYPLEKFHSDVSGRSFHNGRFIQRMREKAASLPNVQLEQGTVTSLLEEKGTIKGVQYKNKDGQELTAYAPLTIVCDGCFSNLRRSLCNPKVDIPSCFVGLVLENCELPCANHGHVILGDPSPVLFYPISSTEIRCLVDVPGQKVPSISNGEMAKYLKTVVAPQIPPQLYDSFIAAVDKGNIRTMPNRSMPADPHPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLRPLRDMNDAPTLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDQARKEMRQACFDYLSLGGLFSQGPVSLLSGLNPRPLSLVLHFFAVAVFGVGRLLLPFPSPKRIWIGARLLTGASGIILPIIKAEGIRQMFFPATVPAYYRTPPVAEQ* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3047 526 Pfam NAD(P)-binding Rossmann-like domain 64 90 - -
Lja5g3047 526 SUPERFAMILY FAD/NAD(P)-binding domain 60 435 IPR036188 -
Lja5g3047 526 Gene3D - 55 436 IPR036188 -
Lja5g3047 526 PANTHER SQUALENE MONOOXYGENASE 1 524 IPR040125 GO:0004506|GO:0016126
Lja5g3047 526 Pfam Squalene epoxidase 211 483 IPR013698 GO:0004506|GO:0016021|GO:0050660
Lja5g3047 526 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 353 369 - -
Lja5g3047 526 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 210 225 - -
Lja5g3047 526 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 338 353 - -
Lja5g3047 526 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 61 83 - -
Lja5g3047 526 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3047 Lja-Chr5 59747452 59751519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3047 42 525 Miscellaneous Gene Families AT1G58440 81.109 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3047 K00511 - gmx:100804406 954.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3047 5 59747452 59751519 Lja5g3047 5 59747452 59751519 ECH
Lja5g3047 5 59747452 59751519 Lja1g4074 1 51723523 51728380 PCT