Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3046 ATGAAGGAAGACTCGACTGATAAGAACGAAGAGAAAGCCCAGGCTATCAAGCTTTGGGGAGTTTTCGCCTTCGGCATCATTAGCGCCACCGTCACCGGCTTCGCCCTGTCCAGGTCGCAGGGGAAAGGAGGGAGTAGCAGTTCTTTCCGAACAGCTTTTCAAGAAGAAGCATGGAAAAGATACAATAAGCGATTGAAAGAGGAGTATGAGGAGGAGATGGAGAGAGTGGAACGAATAAAGCGTATGCAAAGTGTGTTTAATAGAGAAAGGAACAAGCATAGAAGAAGGTATGAGAGCTGGAGGGAAACCGGTCCTGGTGCATATGATCAGCATTTCCAGAGGGACGACTGGTATTGGAAGGCTGAAGCATCTTTCAAAGACCAGTGGAACAATTATCCAAGAGAGAACAGAAGCTATTTATCACATCACTACTCAGTTTTGGGCCTTGACAGGTTGAGAACAACACCATATACTGATGCTGAGATCAAGACAGCATTTAGGACCAAGGCAATGCAGTATCATCCTGACCAGAACCAGGAGAACAGAGAGGCTGCAGAGGCCAAGTTCAAAGAAGTAATGTGTTCATATGAGGCCATACAGAAGGAAAGGAAGAACCAGAATCCTTAA 627 0.4593 MKEDSTDKNEEKAQAIKLWGVFAFGIISATVTGFALSRSQGKGGSSSSFRTAFQEEAWKRYNKRLKEEYEEEMERVERIKRMQSVFNRERNKHRRRYESWRETGPGAYDQHFQRDDWYWKAEASFKDQWNNYPRENRSYLSHHYSVLGLDRLRTTPYTDAEIKTAFRTKAMQYHPDQNQENREAAEAKFKEVMCSYEAIQKERKNQNP* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3046 208 PANTHER HEAT SHOCK PROTEIN-BINDING PROTEIN 4 207 - -
Lja5g3046 208 PRINTS DnaJ domain signature 184 204 IPR001623 -
Lja5g3046 208 PRINTS DnaJ domain signature 166 181 IPR001623 -
Lja5g3046 208 Coils Coil 182 202 - -
Lja5g3046 208 SUPERFAMILY Chaperone J-domain 139 204 IPR036869 -
Lja5g3046 208 SMART dnaj_3 141 204 IPR001623 -
Lja5g3046 208 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 4 207 - -
Lja5g3046 208 CDD DnaJ 143 192 IPR001623 -
Lja5g3046 208 Pfam DnaJ domain 143 205 IPR001623 -
Lja5g3046 208 Gene3D DnaJ domain 142 207 IPR036869 -
Lja5g3046 208 Coils Coil 55 82 - -
Lja5g3046 208 ProSiteProfiles dnaJ domain profile. 142 204 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3046 Lja-Chr5 59717073 59720380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3046 143 207 Miscellaneous Gene Families AT5G49580 41.538 8.62e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3046 - - gmx:100804936 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3046 5 59717073 59720380 Lja5g3046 5 59717073 59720380 ECH
Lja5g3046 5 59717073 59720380 Lja1g4073 1 51715899 51720033 PCT