Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3042 ATGGGCAGGGCTCCTTGCTGTGACAAAGCGAACGTGAAGAAAGGTCCATGGTCGCCAGAAGAAGATGCCAAGCTCAAGTCCTACATAGATGAGCATGGCACCGGTGGCAACTGGATTGCTTTGCCACAAAAGATTGGACTGAAGCGTTGTGGCAAGAGTTGCCGTCTCAGGTGGCTAAACTACCTACGCCCTAATCTCAAGCATGGTGGTTTCTCCGAGGAAGAAGACAACATCATTTGCAGCCTTTACATTAGTATTGGAAGCAGGTGGTCGGTGATTGCAGCTCAACTGCCCGGAAGAACCGATAATGACATAAAGAACTACTGGAACACAAGGCTCAAAAAGAAGCTTTTTGGGAAGCACCGTAACAAAGAAGCACGAAATAGAGGCAACGGTGGTGTTAAGCAAGAAAGCAATAATAGAGAGAGTGTTGAATATCCCTTATCCTTGGTTCATGAAAATAGTACTACTCATCAACAACCATATTTGCCACACATCCCTGTGCTATCACCACCGCCACCTTTGCAATACACAAACCAAGGCGCTAATTTTCAAGAAAAAGTTCATGTGGACTCTTCTTCTTGCATTAACAACAATGAAGTAGTACAATTTGGTCAGTACTCTCCACAGGTTGGTGTTGGAGTACTTGACATGGTGCAAAGAGAAGGGAGTTTGCCACCAACAATCGAAGCAATGGTATCTACTAATTCTCCACAAAGATTGGATGGGTTGGAGTTTTTCTATGGGGAGGAGATAATAGATGATAAGATAATAGGGACCAGTAGTAGTTGTAGCCAAAGTACTAGCTGGGGTCTTGAAACTTGCAATCCTATGTATCATTCACTTCCTTTGAATTTCCAAGGTTAA 867 0.4383 MGRAPCCDKANVKKGPWSPEEDAKLKSYIDEHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIICSLYISIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLFGKHRNKEARNRGNGGVKQESNNRESVEYPLSLVHENSTTHQQPYLPHIPVLSPPPPLQYTNQGANFQEKVHVDSSSCINNNEVVQFGQYSPQVGVGVLDMVQREGSLPPTIEAMVSTNSPQRLDGLEFFYGEEIIDDKIIGTSSSCSQSTSWGLETCNPMYHSLPLNFQG* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3042 288 CDD SANT 71 113 IPR001005 -
Lja5g3042 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lja5g3042 288 SMART sant 13 64 IPR001005 -
Lja5g3042 288 SMART sant 67 115 IPR001005 -
Lja5g3042 288 CDD SANT 16 62 IPR001005 -
Lja5g3042 288 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lja5g3042 288 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lja5g3042 288 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lja5g3042 288 PANTHER OS09G0431300 PROTEIN 1 185 - -
Lja5g3042 288 PANTHER OS09G0431300 PROTEIN 1 185 - -
Lja5g3042 288 Gene3D - 7 68 - -
Lja5g3042 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lja5g3042 288 MobiDBLite consensus disorder prediction 122 141 - -
Lja5g3042 288 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lja5g3042 288 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lja5g3042 288 Gene3D - 70 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3042 Lja-Chr5 59565008 59566582 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3042 1 122 MYB Transcription Factor Family AT3G49690 90.984 9.95e-82 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja5g3042 Myb_DNA-binding 3.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3042 K09422 - gmx:100800290 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3042 5 59565008 59566582 Lja5g3042 5 59565008 59566582 ECH
Lja5g3042 5 59565008 59566582 Lja1g4069 1 51655864 51657833 PCT