Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3037 ATGGAGGAATACAATAATAATCATAATCACAACCACCTGAGTGAAAACTCAGGTCCAAGTCCAAGTTCAAGGCCAAATTTCTTGTACCATCATCAGTTTCCTATCAATAATTTTCATCTTCAATCAGGTGGATCAGATCATCACAACTTTCTTCCCGATCAATCACCACCGCAACAACCACCACTCCCTGCGGCGGTGAAAACTGAAGCCACCACCTCGCAGCTTCTTCACACTCCGATTTTCCACTACCCTTTGATGAGAGGAAATCTTATGCATCATTCTCAGCAAGGAGGAAGTGGGAGCCCGAGCTCTAGCGAAGTTGAAGCCATAAAAGCCAAAATCCTTGCTCATCCTCAATACTCTAGTCTTTTAGAAGCTTACATGGATTGCCAAAAGATAGGTGCTCCACCGGAAGTGGTGGCGCGTCTGGTGGCGGCGAGGCAAGAGTTTGAGGCACGGCGGAGATCTTCAGTTAGCTCAAGGGAAAATTCCAAAGATCCAGAACTTGATCAATTCATGGAAGCATACTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCTATACAAGAGGCTATGGATTTCATGCGGAGGATTGAAACTCAGCTTAACATGCTTTGCAATGGACCCGTGAGGATCTTCAATGATGATAAATGTGAAGGCGTAGGTTCATCAGAAGAGGATCAAGACAACAGTGGTGGAGAAACAGAACTGCCCGAGATTGATCCCCGGGCAGAAGACCGTGAACTCAAAACTCACTTGCTCAAGAAATACAGTGGTTACTTGAGTAGCCTTAAGCAAGAACTTTCCAAGAAAAAAAAGAAAGGAAAACTGCCCAAAGATGCTAGACAAAAGCTGCTTAACTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCATTAGCTGAATCAACTGGTTTGGATCAGAAGCAGATAAACAACTGGTTCATTAATCAAAGGAAGAGGCATTGGAAACCATCTGAAGACATGCAGTTTATGGTGATGGATGGCCTCCATCCTCAAAATGCAACACTTTATATGGATGGTCATTACATGGCGGCTGATGGTCACTACCGCCTTGGGCCATGA 1113 0.4438 MEEYNNNHNHNHLSENSGPSPSSRPNFLYHHQFPINNFHLQSGGSDHHNFLPDQSPPQQPPLPAAVKTEATTSQLLHTPIFHYPLMRGNLMHHSQQGGSGSPSSSEVEAIKAKILAHPQYSSLLEAYMDCQKIGAPPEVVARLVAARQEFEARRRSSVSSRENSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRIFNDDKCEGVGSSEEDQDNSGGETELPEIDPRAEDRELKTHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNATLYMDGHYMAADGHYRLGP* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3037 370 ProSiteProfiles 'Homeobox' domain profile. 271 334 IPR001356 GO:0003677
Lja5g3037 370 CDD homeodomain 283 335 IPR001356 GO:0003677
Lja5g3037 370 Gene3D - 276 338 - -
Lja5g3037 370 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 27 361 - -
Lja5g3037 370 MobiDBLite consensus disorder prediction 1 70 - -
Lja5g3037 370 Pfam KNOX1 domain 109 151 IPR005540 GO:0003677|GO:0005634
Lja5g3037 370 SUPERFAMILY Homeodomain-like 272 346 IPR009057 -
Lja5g3037 370 Pfam Homeobox KN domain 291 330 IPR008422 GO:0003677|GO:0006355
Lja5g3037 370 MobiDBLite consensus disorder prediction 10 53 - -
Lja5g3037 370 SMART KNOX1_2 108 152 IPR005540 GO:0003677|GO:0005634
Lja5g3037 370 SMART KNOX2_2 159 210 IPR005541 GO:0003677|GO:0005634
Lja5g3037 370 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 27 361 - -
Lja5g3037 370 Pfam KNOX2 domain 164 209 IPR005541 GO:0003677|GO:0005634
Lja5g3037 370 ProSiteProfiles ELK domain profile. 251 271 IPR005539 GO:0003677
Lja5g3037 370 SMART HOX_1 273 338 IPR001356 GO:0003677
Lja5g3037 370 ProSitePatterns 'Homeobox' domain signature. 309 332 IPR017970 GO:0000981|GO:0006355
Lja5g3037 370 SMART ELK_2 251 272 IPR005539 GO:0003677
Lja5g3037 370 MobiDBLite consensus disorder prediction 220 248 - -
Lja5g3037 370 Pfam ELK domain 251 272 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3037 Lja-Chr5 59424079 59430098 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3037 65 370 Homeobox Transcription Factor Family AT4G08150 73.718 1.04e-151 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lja5g3037 KNOX2 4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3037 - - gmx:100807602 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3037 5 59424079 59430098 Lja5g3037 5 59424079 59430098 ECH
Lja1g3684 1 46047111 46047614 Lja5g3037 5 59424079 59430098 ECH