Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3035 ATGCTGAATCACGTGAGCAGAAACAATAGCTGGTCATGGCTATCATCAGCAGTGAGGCACTACTCTAGAATTCAGCCCCCAAGGCCTGTTTGTGTTGAACCAGTAATCAGAGTATCTAACAACATTGCCCGCTTGGATGTGCCCAAAGAAGGCCCAAAACCCAGACAGATACTATCATTGCCTCCTTTTCCTGGTCACCCCTTGCCTGGTGCTTCTGGGCAGCAGCGTGATCATGTCACAGCAGTCAATTGGATTAAGTATTACTTCAAGGGCACATGGGGTTCCGTTATCGAGTCTCATTTTAGGAAGGGGCTTGTGCAAATGGAGGACCTGATTGCTGCCGACTCTTTCACTCAGAAGGATGAGCGGATGAAACCTATGCGAAAGATGAGACCTAATGACGTAATGAAGCCTGGAGCCAGACTTCACGTCCCTGTATCAATGGCTGAGACTAGGATTTCGAAAAGATATGATGCAATACCAAGTGGAACACTGTATCCAAATGCTGATGAAATTAAGTATCTGCAAAGGCTTGTGATATACAAGGACTCTGCTATTATTGTGCTGAATAAACCTCCAAAATTGCCTGTCAAGGGTAATCTTCCAGTTCATAATAGCATGGATGCATTGGCTGCTGCAGCACTGTCCTATGATTATGATGAGGGTCCTAAACTGGTTCACCGTCTTGACAAAGAGAGTAGTGGCATCCTATTATTTGGGAGAACAAAAGATAGCGTATCTCATCTTCAATGGTTATTCAGTAACATTAACAGCGCAAAATCTTCTTGTAAGGCTTGGAATGATGCATGTGAAGCTACATATCAGAGGTATTGGGCATTGGTCATAGGGACTCCCAATGAGAAGGAAGGCATAATTCACGCTCCTCTTTCTAAGGTACTTCTGAATGATGGGAAGACTGAGAGGGTCATGCTAGCTCATCATTCAACTATAGAACCTCGCCAAGAGGCTGTGACTGAGTATCGAGTGCTTGGTCCAAAGATAAATGGGTGCTCATGGGTTGAGCTGCGTCCACTTACTTCCCGGAAGCATCAGTTGCGTGTCCATTGTGCTGAAGCACTCGGCACACCAATAGTAGGTGACTATAAGTATGGCTGGTTTGTGCATAACCGATGGAAACAAATGCCGAGAGTCGATATTGAGCCAACAACTGGAAAACCATACAGGATGAGGAGGCCAGAAGGCCTAGAAGTTCAGAAGGGAAGCGTTTTGTCCAAGGTCCCTCTACTGCATCTTCACTGCAGAGAACTTGCGCTCCCCAACATTTCTAAGTTTCTGCATGTTTTTGAAAAGAGCCCTGAAGAACTGCACCCTTCACTTAGGGAGCAGCCTGATGTTCTTCGCTTCGTTGCAACAATGCCTTCACATATGAGGATTAGTTGGAATCTTATGTCTTCGTATTTAGTTTGA 1428 0.4531 MLNHVSRNNSWSWLSSAVRHYSRIQPPRPVCVEPVIRVSNNIARLDVPKEGPKPRQILSLPPFPGHPLPGASGQQRDHVTAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKPMRKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDALAAAALSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQMPRVDIEPTTGKPYRMRRPEGLEVQKGSVLSKVPLLHLHCRELALPNISKFLHVFEKSPEELHPSLREQPDVLRFVATMPSHMRISWNLMSSYLV* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3035 475 CDD PseudoU_synth_RluA_like 186 382 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lja5g3035 475 Pfam RNA pseudouridylate synthase 186 357 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lja5g3035 475 Gene3D Pseudouridine synthase 170 436 - -
Lja5g3035 475 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 13 472 - -
Lja5g3035 475 SUPERFAMILY Pseudouridine synthase 171 430 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lja5g3035 475 PANTHER RNA PSEUDOURIDINE SYNTHASE 3, MITOCHONDRIAL 13 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3035 Lja-Chr5 59337783 59345291 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3035 - - gmx:100817786 847.425