Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3034 ATGGGAAGATCTCCTTGTTGTGATAAAGATAATGTTAAGAGAGGGCCATGGTCTCCAGAAGAAGATGCAATTCTCAAGAGTTATGTTGAGACTCATGGCACTGTTGGAAATTGGATTGCATTGCCAAGAAAAGCTGGCCTTAGGCGGTGTGGGAAGAGTTGTCGTCTAAGGTGGCTCAATTATCTCAGGCCAGACATCAAACATGGAGGCTTCACTGAAGAAGAGGACAACATCATTTGTACCCTCTATGCTCAAATAGGAAGCAGATGGTCTGTAATAGCTTCTAATCTTTCTGGGAGAACAGACAATGATGTGAAAAACCATTGGAACACAAAACTAAAGAAGAAGATCCTTGCAGGAGAAATTAACCTCAAAGCACTGAAAGAAAATGACACCTTTCTTCCATCAACAACTCCATCACTGATTCAAGATGTCATGCCTCAAAATTTAGATTACCCTGCTTCACAAATTCAAAATCCTCCACTGCCTTCAGTGCTTCAAATAGATAACAACAATGGTTATGCTAGTTCTGGATTCAACATGATTCATGAACAAAACATGGGTTCTGATCTCATGGATGTTGTCTCAAACATTGGTTCAAGTTCAGGGAACTACAATCCCATGGTGTCTTTTTTATCTCAAGAAGGTCCAAGCAACATTTCAGATTCTTCTACCAACAAGTGTCTGTCTCTGCCACCAGAACATGACGGTGATGTGGGAATGATGGATTTTGGCTTTGAATTTCCTTATGATCCTACAAACTACCATGGTAGAGTTGGTGAATTCACACCAAGTAATTACTACTATTCTGAGTGGGCTGATTTGAGCAATGATGACATTAAGCCACATTGA 852 0.4038 MGRSPCCDKDNVKRGPWSPEEDAILKSYVETHGTVGNWIALPRKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIICTLYAQIGSRWSVIASNLSGRTDNDVKNHWNTKLKKKILAGEINLKALKENDTFLPSTTPSLIQDVMPQNLDYPASQIQNPPLPSVLQIDNNNGYASSGFNMIHEQNMGSDLMDVVSNIGSSSGNYNPMVSFLSQEGPSNISDSSTNKCLSLPPEHDGDVGMMDFGFEFPYDPTNYHGRVGEFTPSNYYYSEWADLSNDDIKPH* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3034 283 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lja5g3034 283 CDD SANT 71 113 IPR001005 -
Lja5g3034 283 PANTHER OS09G0431300 PROTEIN 1 138 - -
Lja5g3034 283 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lja5g3034 283 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lja5g3034 283 Coils Coil 110 130 - -
Lja5g3034 283 CDD SANT 16 62 IPR001005 -
Lja5g3034 283 Gene3D - 7 68 - -
Lja5g3034 283 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lja5g3034 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lja5g3034 283 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lja5g3034 283 SMART sant 13 64 IPR001005 -
Lja5g3034 283 SMART sant 67 115 IPR001005 -
Lja5g3034 283 Gene3D - 70 133 - -
Lja5g3034 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lja5g3034 283 PANTHER OS09G0431300 PROTEIN 1 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3034 Lja-Chr5 59325168 59326893 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3034 1 119 MYB Transcription Factor Family AT2G36890 80.672 1.58e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja5g3034 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3034 K09422 - gmx:100817747 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3034 5 59325168 59326893 Lja5g3034 5 59325168 59326893 ECH
Lja1g4069 1 51655864 51657833 Lja5g3034 5 59325168 59326893 ECH