Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3033 ATGGATTTCATGAAGGTCTTCGATCAAACCGTTCGAGAAATAAAGAGAGAGGTGAATCTGAAGGTGCTCAAGGTTCCAGAAATCGAACAAAAGGTGTTGGATGCAACTGATAATGAACCTTGGGGTCCTCATGGTTCTGCTCTGGCAGAGATTGCGCAGGCGACCAAAAAATTTACTGAATGCCAACTGGTCATGAACGTTCTTTGGACGAGACTGAGTGAAACTGGAAAGGATTGGCGATATGTATACAAGGCATTAGCTGTTATAGAGTATTTGGTAGGACATGGAGCTGAACGTGCAGTTGATGACATTATAGAACATACTTTTCAGATCTCAGCACTTTCTAGTTTTGAATATGTTGAGCCTAGTGGGAAGGATGTGGGACTCAATGTCAGGAAGAAGGCAGAAAACATCGTGGCCCTTTTGAATGATAGAGATAAGATACACGACGTCAGAAATAAAGCTGCTGCAAATCGTGATAAGTACGTTGGAGTTTCTTCTAGTGGAATCACGCACAAGGCTACGTCAGCCTCTTACAGTAGTGGCAGCTACCAGAGCAGTAGTAAATATGGAGGCTTTGGTTCAAAGGATAGTGACAGGTTTAGTGATAGCTATAAAGACAAGGGTTACAATGAAGAAGAAAAAGTGGAGAAAGATTACTCTGGAAAGTCACGCCATGGCACTGCAAATGATAATCAAGAGAACTCTTATAAGAAGGGTTCTGCACGGTCTCTCAGCAAAAGTCAGGACAAAATGTCATCTAGAGTATCAAAGTCATCTACTAATGCAAACAGTTCAGTTCCTTCTCAAAGTTCAGGTGTACCTGTAAACAGTACTGAGGATGATTTTGACGATTTTGATCCGAGAGGAACATCAACTAAGGCTTCATCTGGAAGCTCAAATCAGGTTGATCTCTTTGGGCAAGATTTAATTGGTGACCTCATGGATGCCCCAGCATCTGTTTCTGTAGAAAATCCAGCAACTAGTGATGTGTCAGAGGTCGATCTCTTTGCAGATGCATCATTTGTATCAGCGGAGCCTCATGCGGACAAAGGAGCTAGTTCTCAACCACAGGATAAAGTGGATCTATTTTCTTCACAGCCTGCCATTCCTACAGTTACACCCACAGTTGACTTGTTTTCCATTCCTGAACCAGTTGTGCAGCCTGACAACAAGTCAGAAAACTATGTTCCTGTGAATAATAGCACTTTCGATCCCTTCGCTGCTGTTCCTCTTAACACATTTGATGGATCAGATGTTTTTGGTGAATTTTCTTCACAGTCTGATTCTGTATCTTCACAGCCCTCAAATAATGTTGTCAGCGATGGCAGCCATGATAATATGAATGGGAAGTCTTTAGCAGACTCCAAAGTTTCACCTAAAAAGGATGCCTTCCAGGTGAAGTCTGGCATTTGGGCTGAATCACTAAGCCGTGGATTGATTGATCTCAATATATCTGCGCCCAAAAAAGTATCCCTTGCGGATGTTGGAATTGTGGGGGGATTGAGTGATGGATTTGATGAAAAGGAGAAAGGCACTCCCCCACCTTCATTTTACATGGGGAGAGCTATGGGTTCAGGATCTGGTCTTGGTATGTCTGGAGTCCCTTCTTCACAGCCTGGAACTGGAGATGACATATTCTCAAATTGGGGTGGCCATCAATTTGGTGGGTTCCAAAAATAA 1683 0.4296 MDFMKVFDQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGSALAEIAQATKKFTECQLVMNVLWTRLSETGKDWRYVYKALAVIEYLVGHGAERAVDDIIEHTFQISALSSFEYVEPSGKDVGLNVRKKAENIVALLNDRDKIHDVRNKAAANRDKYVGVSSSGITHKATSASYSSGSYQSSSKYGGFGSKDSDRFSDSYKDKGYNEEEKVEKDYSGKSRHGTANDNQENSYKKGSARSLSKSQDKMSSRVSKSSTNANSSVPSQSSGVPVNSTEDDFDDFDPRGTSTKASSGSSNQVDLFGQDLIGDLMDAPASVSVENPATSDVSEVDLFADASFVSAEPHADKGASSQPQDKVDLFSSQPAIPTVTPTVDLFSIPEPVVQPDNKSENYVPVNNSTFDPFAAVPLNTFDGSDVFGEFSSQSDSVSSQPSNNVVSDGSHDNMNGKSLADSKVSPKKDAFQVKSGIWAESLSRGLIDLNISAPKKVSLADVGIVGGLSDGFDEKEKGTPPPSFYMGRAMGSGSGLGMSGVPSSQPGTGDDIFSNWGGHQFGGFQK* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3033 560 MobiDBLite consensus disorder prediction 290 304 - -
Lja5g3033 560 SMART enth_2 26 152 IPR013809 -
Lja5g3033 560 MobiDBLite consensus disorder prediction 531 545 - -
Lja5g3033 560 MobiDBLite consensus disorder prediction 522 560 - -
Lja5g3033 560 SUPERFAMILY ENTH/VHS domain 7 152 IPR008942 -
Lja5g3033 560 Pfam ENTH domain 27 147 IPR013809 -
Lja5g3033 560 Gene3D - 19 165 IPR008942 -
Lja5g3033 560 PANTHER CLATHRIN INTERACTOR EPSIN 1 1 552 IPR033521 GO:0006623|GO:0030276
Lja5g3033 560 MobiDBLite consensus disorder prediction 424 459 - -
Lja5g3033 560 MobiDBLite consensus disorder prediction 424 454 - -
Lja5g3033 560 PANTHER EPSIN/ENT-RELATED 1 552 - -
Lja5g3033 560 MobiDBLite consensus disorder prediction 199 225 - -
Lja5g3033 560 ProSiteProfiles ENTH domain profile. 20 152 IPR013809 -
Lja5g3033 560 MobiDBLite consensus disorder prediction 226 278 - -
Lja5g3033 560 CDD ENTH 28 144 - -
Lja5g3033 560 MobiDBLite consensus disorder prediction 174 193 - -
Lja5g3033 560 MobiDBLite consensus disorder prediction 174 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3033 Lja-Chr5 59314589 59320689 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3033 K12471 - gmx:100789110 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3033 5 59314589 59320689 Lja5g3033 5 59314589 59320689 ECH