Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0343 ATGGCGGGGTCGACGTCGTCCTCCGCCGCGGGCAGCACCAATATCATGCTCGCGATCTTCGAGAAGAAGGCGAACACGGTGGATCTCTACCGCCCCCTCCGCAACTACGTCGCCTTCCACTACTCCGAGCGCGAGGCCCAAAACATCGAAGACGATCTCCAAACCCTAAAGCAGCTCCGCTCCGACCTCGACCGCAACCCCGATCCCTCCCTCCCTTCCCGCCGCGACCTCCTCCAGAACTACTTCAAGGCTCTCTGCCAGGTCGAGACCCGTTTCCCCATCTCACCCGACCCGGACCATGTCAACTCCCTCACCTTCGTCTGGTTCGATGCCTTCAAGCCCAAACTGAAAGCCTCTCAGCAGAACATCCACCTCGAGAAGGCCTCCGTTCTGTTTAACCTCGGCGCCGTCTACAGCCAGATTGGTTTATCTTACGACCGCAACTCCGTCGATGGCCGCCGGCAGGCTTCCCACGCCTTCATCGCTGCAGCCGGATCCTTCGCTTTTCTACGGGACAATGCCTCCATGAAGGCCTCCATCGGGAACTCCACCACCGTCGATTTGTCCGTCGAGTGCGCTGGAATGTTGGAGAAGCTCATGCTCGCTCAGGCTCAGGAGTGTGTCTTCGAAAACACCATTGCTAAAGGGAGCACCCCTGGTGTTTGTGCCAAGATCTCTAGACAGGTTGGACTGTATTATGAGGAAGCATTGGCCGCGCTCAATGTTGCGCCTTTAAGCCAGCATTTTGACAAGTCATGGATAGTTCATGTGCAGTTAAAGTCAGCTCTATTTTATTCAGAAGCTTGTTACAGATGTGGATTGGAACTGCATGAAAAAGAGGAGATAGCGGAGGAGATTGCTAGATTAAGGAGTGCGGTTAGTGTTCTTACCGAAATTAAGAAAAGCTCAAAGGGTGCTGCGGTTCAGATTCTGGATGCGATTAGCAAGTTGGAGGTCAATATTAACCGGAACTTGGAAAGGGCTGTCAAGGAGAATGATAGAGTTTACCTCATGAGAGTTCCTTCTCCCAGTTCGTTGTCACCACTTCCAGCATTTTCTATGGTGAAACCTATGCCGATGAACGAGGTGTTGGATGCGAGCAAAGAGAAGATGTTTGCAAGTCTTGTCCCTGACAACAGTGCAAAGGCTCTCTCTAGGTACACCGAGATGGTGGATGATATTATAAGAACACAAGCTGAGAAGTTACAGCAAGCTAGTGAGCTAACCCGAGTTAGGCTTAAGGAAATGGAGCTGCCAGATTCTATTCTTGCTTTGGAAGGAAATTTTACTCTACCAACAAATCTCAAAGAAGATGTCGAGGCTGTGCAGATCAGTGGGGGCCCTGCTGGTTTGGAATCAGAGCTGCAGCAACTTAAGGATCTGAGGAGGGTGAATCAAGAATTGTTGGTTCAGACTGAGGAGTTATTGCAGAAGGAAGCAAGAGAAGATGCTCAGTTTAGAAGCCAATTTGGAACAAAGTGGACTAGGCCTCAATCAAGCACTTTGACAAAGAACTTGCAGGATAGACTCAACAGGTTTGCGGGTAACCTGAAACAAGCTGCAGAAAGTGATTCTAGGATTGAGCGTTCAGTTAGAGAACATTCGGCTCTCATGGCAATCCTGGATGCCCGTCCGATTGAATCAGCACTCCCGAGCTTGGCAAGGCCAATTATGTCTTTTGATCAAAATGAAGATGCTGTCGTGGGGTCTCTCAAGCAAAGCTTGAGACAACTAGAGACTCTTGGAGCTCAAAGGGCTGGTCTTGAAGACATGTTGAAAGAGATGAAAAGAAAGGATGATATATTACCCAAGTTGATGACATCCACCGGTTCTTATGAGGACCTTTTCAAGAAGGAGGTAGCAAAATATGACCATATTTGTGAAGATATAGCTCAAAATATTGAGGCTCAAGAGCAGTTGTTGCTGCAGATCCAGGCTCAAAATGATGATTTTTCTGCTATCTTCAATCTTGAAGACTACAAAGCTTCACGTGAAAAGTCCTACAAGCAGATTGAAGCTGCCATAGCCAAGTTTCGAGAAATAAAGGACAACATCAATGAAGGGTTAAAATTCTATGTTACTCTACAGGATGCAATCACAAATGTAAAGCAGCAGAGCAATGACTTTGTAATGACAAGGAACATCCAGTGCAGGGAAATGATTGAAGATGTTCAGAGACAAGTGGCTGGTTTGAGTTTCCAGGACAAAAACAATGGTGCTTATAACGGCAACTACCCTTCAGTGGGAAACCAAAACCCAAGATCCAACACACAACAAACAGATCCTTCTCGTCCCCAAACACCTTATTATCAGCCTGATCAAAGATCCGATACACAAACGAATCCTTCTCGTCCCCAAACACCTTACTACCAGTCTGCTGAGCAGCCACCTGTTCCTGCCTATGGTCATCACCCTCCCCCATATGGTCATCAGCCTCCACCTCCATACCAAATTCCACCAACATCAGCTGCTCCATACCCTCCCCCCCAGGTCCACCAGCAGCCACCAGCAAGCCATGAGTATGGCCAACCTGCATATCCCGGATGGCGTGGTCCATACTACAATGCACACGCGCAACAACCTGCTTCTGCTCCTCGGCCTCCATATACCATCCCGTCTCCATATCCTCCGCCTCATCAAAGTGGCTACTATAAGCAGCAATAG 2664 0.4872 MAGSTSSSAAGSTNIMLAIFEKKANTVDLYRPLRNYVAFHYSEREAQNIEDDLQTLKQLRSDLDRNPDPSLPSRRDLLQNYFKALCQVETRFPISPDPDHVNSLTFVWFDAFKPKLKASQQNIHLEKASVLFNLGAVYSQIGLSYDRNSVDGRRQASHAFIAAAGSFAFLRDNASMKASIGNSTTVDLSVECAGMLEKLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALAALNVAPLSQHFDKSWIVHVQLKSALFYSEACYRCGLELHEKEEIAEEIARLRSAVSVLTEIKKSSKGAAVQILDAISKLEVNINRNLERAVKENDRVYLMRVPSPSSLSPLPAFSMVKPMPMNEVLDASKEKMFASLVPDNSAKALSRYTEMVDDIIRTQAEKLQQASELTRVRLKEMELPDSILALEGNFTLPTNLKEDVEAVQISGGPAGLESELQQLKDLRRVNQELLVQTEELLQKEAREDAQFRSQFGTKWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDSRIERSVREHSALMAILDARPIESALPSLARPIMSFDQNEDAVVGSLKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSTGSYEDLFKKEVAKYDHICEDIAQNIEAQEQLLLQIQAQNDDFSAIFNLEDYKASREKSYKQIEAAIAKFREIKDNINEGLKFYVTLQDAITNVKQQSNDFVMTRNIQCREMIEDVQRQVAGLSFQDKNNGAYNGNYPSVGNQNPRSNTQQTDPSRPQTPYYQPDQRSDTQTNPSRPQTPYYQSAEQPPVPAYGHHPPPYGHQPPPPYQIPPTSAAPYPPPQVHQQPPASHEYGQPAYPGWRGPYYNAHAQQPASAPRPPYTIPSPYPPPHQSGYYKQQ* 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0343 887 MobiDBLite consensus disorder prediction 865 879 - -
Lja5g0343 887 Pfam BRO1-like domain 16 394 IPR004328 -
Lja5g0343 887 CDD BRO1_Alix_like_1 16 371 - -
Lja5g0343 887 MobiDBLite consensus disorder prediction 799 834 - -
Lja5g0343 887 CDD V_Alix_like_1 377 713 - -
Lja5g0343 887 MobiDBLite consensus disorder prediction 735 793 - -
Lja5g0343 887 ProSiteProfiles BRO1 domain profile. 14 409 IPR004328 -
Lja5g0343 887 Gene3D alix/aip1 in complex with the ypdl late domain 377 655 - -
Lja5g0343 887 SMART BRO1_2 15 399 IPR004328 -
Lja5g0343 887 Pfam ALIX V-shaped domain binding to HIV 431 715 IPR025304 GO:0005515
Lja5g0343 887 Gene3D alix/aip1 like domains 12 376 IPR038499 -
Lja5g0343 887 Coils Coil 578 598 - -
Lja5g0343 887 MobiDBLite consensus disorder prediction 735 887 - -
Lja5g0343 887 PANTHER PCD6 INTERACTING PROTEIN-RELATED 8 877 IPR045251 GO:0071985
Lja5g0343 887 Gene3D alix/aip1 like domains 423 704 - -
Lja5g0343 887 Coils Coil 627 647 - -
Lja5g0343 887 Coils Coil 46 66 - -
Lja5g0343 887 Coils Coil 451 478 - -
Lja5g0343 887 PANTHER PROGRAMMED CELL DEATH 6-INTERACTING PROTEIN-LIKE 8 877 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0343 5 3079523 3086711 Lja5g0343 5 3079523 3086711 ECH