Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0227 ATGGCAACCACCACCAACCACCCTTCATCATTCTCAAGCCTCCGCGCCTACCTCGGTGCCGTCGCCCACACTCCCTCCCGCCTCGCTCGCCGTGCCGTTTCTGTCTCCACCTCCTACGACGAGATGAGCAAAGTTCGCGCCCGCTCCGGTTCCTCCATGCGTAAGACCCTCCGCTGGTTCGACCTCGTCGGCTTAGGCCTCGGCGGTATGGTCGGCGCCGGCGTCTTCGTCACCACCGGCCGCGCCGCTCACGACTTCGCCGGTCCCGCTGTTGTCCTTTCCTACGCCATTGCCGGCCTCTGCGCCCTCCTCTCCGCCTTCTGCTACACCGAGTTCGCCGTCGATATGCCTGTCGCCGGCGGCGCCTTCAGCTACCTCCGCGTCACCTTCGGTGAATTCGCAGCGTTTCTAACCGGCGCAAACCTCGTGATGGACTACGTGATGTCCAATGCCGCCGTCGCCAGAAGCCTCACAGTCTACCTCGGAAGCGCAATCGGAATCTCCCCGGAGAAATGGAGGCTCACCGTCCCTTCCTTTCCCAACGGCTTCAACCAGGTAGACATCGTAGCGGTGGCCGTCGTTTTGCTGATCACTCTCGTAATCTGCTACAGCACTCGGGAGAGTTCAGTGGTGAACATGATCCTCACAGCGCTGCACATACTCTTCATAGCGTTCGTGATAGTGATCGGATTCTGCAGAGGGAGCTGGAAGAATTTCACGGAGCCGGCTCACCGGGAGAATCCGTCGGGATTCTTCCCGTACGGCGCGGCGGGGGTGTTCAAAGGCGCGGCGGCGGTTTACATGAGTTACATTGGGTACGACGCCGTTTCAACGATGGCGGAGGAAGTTAGAGATCCGGTGAAAGATATTCCGATCGGAGTTTCGGGTTCGGTTGCGATCGTAACCGTTTTGTATTGCTTAATGGCTGCTTCAATGTCAAAGCTTCTTCCCTACGATTTGATTGATGCTGAGGCGCCATTTTCGGCGGCGTTTAACGGGAGATCGGACGGTTGGGGATGGGCGTCACGGGTGATTGGGGTGGGGGCCAGTTTTGGGATACTGACGTCGCTGTTGGTGGCGATGCTGGGTCAGGCACGTTACATGTGTGTCATCGGACGCTCCAATGTGGTCCCTACTTGGTTCGCTAGGGTCCACCCCAGAACTTCAACCCCTGTCAACGCCTCTGCTTTTCTTGGGATCTTCACAGCAGCAATTGCCCTTTTCACTGACCTTGAGATCCTCCTTAATCTGGTGTCCATTGGCACCCTCTTTGTCTTTTACATGGTGGCAAATGCTGTGATCTATAGACGTTATGTGGATGCAGGGAAAACCAATCCATGGCCTACATTGTCCTTCCTCTGCTCATTTTCCTTTACCGCCATCATGTTCACACTTATTTGGAAATTTGTACCATCAGGAAGGGCAAAAGCAGGGTTGCTTTGTGCTTGTGGTGTAATTGCTATTGCAGTGTTACAACTTTTCCATTGTATGGTCCCTCAAGTTCGTAGACCAGAATTCTGGGGTGTCCCACTCATGCCATGGATACCCTGCATCTCAATCTTTTTGAATTTGTTCTTGCTTGGAGCATTGGATGGACCATCCTATGTTAGGTTTGGAATCTTTTCGGCAGTTGCGGTGCTCTTCTATGTCTTTTACAGCGTTCATGCTAGCTTTGATGCTGAAGGAGATGGTTCCCTCAGTCAAAAGAATGGTGAAATTCATGCGGAATCAATAGAATGTGAGGACCTGAGTTCCAAAGTGTAG 1764 0.5408 MATTTNHPSSFSSLRAYLGAVAHTPSRLARRAVSVSTSYDEMSKVRARSGSSMRKTLRWFDLVGLGLGGMVGAGVFVTTGRAAHDFAGPAVVLSYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGANLVMDYVMSNAAVARSLTVYLGSAIGISPEKWRLTVPSFPNGFNQVDIVAVAVVLLITLVICYSTRESSVVNMILTALHILFIAFVIVIGFCRGSWKNFTEPAHRENPSGFFPYGAAGVFKGAAAVYMSYIGYDAVSTMAEEVRDPVKDIPIGVSGSVAIVTVLYCLMAASMSKLLPYDLIDAEAPFSAAFNGRSDGWGWASRVIGVGASFGILTSLLVAMLGQARYMCVIGRSNVVPTWFARVHPRTSTPVNASAFLGIFTAAIALFTDLEILLNLVSIGTLFVFYMVANAVIYRRYVDAGKTNPWPTLSFLCSFSFTAIMFTLIWKFVPSGRAKAGLLCACGVIAIAVLQLFHCMVPQVRRPEFWGVPLMPWIPCISIFLNLFLLGALDGPSYVRFGIFSAVAVLFYVFYSVHASFDAEGDGSLSQKNGEIHAESIECEDLSSKV* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0227 587 PANTHER AMINO ACID/POLYAMINE TRANSPORTER I, CATIONIC AMINO ACID TRANSPORTER-RELATED 5 575 - -
Lja5g0227 587 Gene3D Amino acid/polyamine transporter I 52 494 - -
Lja5g0227 587 PANTHER INNER MEMBRANE TRANSPORTER YGJI-RELATED 5 575 - -
Lja5g0227 587 Pfam Amino acid permease 57 478 IPR002293 GO:0016020|GO:0022857|GO:0055085
Lja5g0227 587 Pfam C-terminus of AA_permease 507 557 IPR029485 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0227 Lja-Chr5 1979862 1983854 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0227 144 572 Organic Solute Cotransporters AT3G10600 74.126 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0227 - - gmx:100816464 974.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0227 5 1979862 1983854 Lja5g0227 5 1979862 1983854 ECH