Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4080 ATGTTCCTCCACGGAAATGAACCGGTCCGGTTCTCATGTGCTCCGGTTCTTGAAACCATGTTGCTGACCGAAAGCGAAATACAAGACCTGTTTTCCCTCATTAACCAACCGGCAGACCCGGCCAGCCCAAGCTCTGGTTCAAGCCGCTCGGTCTACTCGGCCGAGGAGAGAAAGATGAGGCGCATGCAGGCGAACCGGGAGTCAGCCCGACGGTCCAGATGCAAAAGGAAGAAGCATTTGGAGAAGCTAACGAGCCAAGTGAACCGGATGAGAATTGAAAACCGTGAAATGAAAAACCTAGTAGCCTTCACAGTGCAAGAGCATCTCCTTCTATCCCTACACAATGATGAGTTGAGATCCGAATCCATGACCCTTTTGGCCGAACTTTCAGATCTATATGCAATTTTAGGCACCACACTTCTACATTAA 429 0.4965 MFLHGNEPVRFSCAPVLETMLLTESEIQDLFSLINQPADPASPSSGSSRSVYSAEERKMRRMQANRESARRSRCKRKKHLEKLTSQVNRMRIENREMKNLVAFTVQEHLLLSLHNDELRSESMTLLAELSDLYAILGTTLLH* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4080 142 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 60 75 IPR004827 GO:0003700|GO:0006355
Lja1g4080 142 SUPERFAMILY Leucine zipper domain 57 111 IPR046347 GO:0003700|GO:0006355
Lja1g4080 142 Coils Coil 52 72 - -
Lja1g4080 142 PANTHER BZIP TRANSCRIPTION FACTOR 26 141 - -
Lja1g4080 142 Coils Coil 80 100 - -
Lja1g4080 142 SMART brlzneu 53 124 IPR004827 GO:0003700|GO:0006355
Lja1g4080 142 Gene3D - 55 107 - -
Lja1g4080 142 CDD bZIP_plant_GBF1 58 108 IPR045314 GO:0003700|GO:0006355
Lja1g4080 142 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 55 107 IPR004827 GO:0003700|GO:0006355
Lja1g4080 142 MobiDBLite consensus disorder prediction 35 76 - -
Lja1g4080 142 MobiDBLite consensus disorder prediction 53 69 - -
Lja1g4080 142 Pfam Basic region leucine zipper 55 98 IPR004827 GO:0003700|GO:0006355
Lja1g4080 142 PANTHER BZIP TRANSCRIPTION FACTOR 44 26 141 - -
Lja1g4080 142 MobiDBLite consensus disorder prediction 35 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4080 Lja-Chr1 51842109 51842537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4080 12 136 bZIP Transcription Factor Family AT3G49760 34.074 1.27e-15 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lja1g4080 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4080 - - gmx:102661984 165.236
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3063 5 60057586 60058171 Lja1g4080 1 51842109 51842537 PCT