LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g4076	ATGATGAACAACAAGTCCATGAATGACAACAGTGATGATAGAAACGACAGTCATAATAACTGGTTGGGATTCTCTCTTTCACCTCACATGAAAATGGATGCTATAACTTCTGCCCCTCTCTACCACCATCATCATCAACAGCCACAAGCTTCTGGAGGTTCCAACACTGTTCCTACAACCTTCTATGGTTCTTCTGGATTCTGTTATGGTGTTGGAGAAAATGGTAACTCCCATTCTCCTTTGACTGTAATGCCTCTCAAATCAGATGGCTCACTCTGCATCATGGAAGCTCTCAGCAGATCACAAACACCAGGGATGGTGCCTACTTCATCTCCAAAACTTGAGGACTTTCTAGGTGCAAGTATGGGATGTCATGAATATGGAGGCCAAGAAAGTGAACTAGCAATGTCTCTGAGCTTAGACAGCATCTATTACAGTACTCAGAATGCAGGAGATCCTCATCAAGCTAACAGAGACCATTCACTTGAACTTCTTTCACATCCTTATTACTCAGGACTTGATTGCCATGGGATGTATCAATCATCACCATTGGAGGAAGAAAACAAGGAAACAGGAAATGTCACAGCTTGCAGCTCTCAAATAGTTGAGTATTCTGCTCAGCATGCTGTGGAGCAGAAAATGAACTGTAACATTGTGAATGATCGTGGAAATGCTGCTTCTGGTGGTGGTTCTGTTGGGTGTGGTGGTGAGTTACAGTCACTGAGTTTATCTATGAGTCCTGGCTCTCAATCTAGCTGTGTCACTGTTCCGAGTCAGATCTCACCTTCTGGGAGTGACTCAGTGGCTGGAAATGGGAAAAAGAGAGGCGCTGCTAAGATGGGTCAGAAGCAACCAATGCATAGGAAATCTATTGATACATTTGGACAGAGAACATCTCAGTACAGGGGTGTCACAAGGCATAGATGGACTGGTAGATATGAAGCACATTTGTGGGATAACAGTTGCAAGAAGGAAGGACAAACCAGGAAAGGAAGACAAGTATATTTGGGGGGTTATGATATGGAGGAGAAAGCTGCAAGGGCCTATGATCTTGCGGCTCTCAAGTACTGGGGAGCTGCTACACATATAAACTTCCCTGTAGAAAATTACCAAGTCCAACTTGAGGAAATGAAGAACATGACCAGGCAGGAATATGTTGCTCACTTGAGAAGAAAAAGCAGTGGTTTCTCAAGGGGTGCTTCAATGTACAGAGGAGTGACAAGGCACCACCAACATGGCAGGTGGCAAGCTAGGATAGGCAGAGTTGCTGGAAACAAGGACCTTTACCTTGGCACATTCAGCACTCAAGAGGAAGCAGCTGAAGCATATGATGTAGCAGCAATCAAATTCCGTGGAGCAAATGCTGTCACCAACTTTGACATATCAAGATACGATGTCGAAAGGATCATGGCCAGTAATGTTCTGCTTGCCGGGGACATGGCTAGAAGAAACAAAGATAATGATCCAAGAATTGAGGCCATTCAATGCAACAATGGAGAATCAGTCCAAGCTGCAGCTAGAAACAACAATGAAAATGTTTCAGATTGGAAAATGGTTTTGCATCACCCTCCACAGCAAGAACAGAACACTAACTGTGACCAAAAAGTTATGAATTGTGATACCTACAGAAACGCTGCTTTCTCTATTGCGCTACAAGACCTTGTTGGGGTTGATTCATTAGGTTCTAGCTATGACTCTAGCAAGATTGGGACTCATTTTTCAAACCCTTCTTCTCTGGTAACAAGTTTAAGCAGTTCAAGAGAAGCTAGCCCTGAAAAAACTGGTCCTTCATTACTCTTTCCAAAGCCTCCAATGGAAACAAAAATTGTCAACAACCTCAATTCCTCTGGTGTTAGTTCTTGGTTTCCCTCTCCAATGAGGCCAGCTTCTGCTATCAACTTGTCTCATTTGCCAGTTTTTGCTGCTTGGAATGATGCCTAG	1941	0.4364	MMNNKSMNDNSDDRNDSHNNWLGFSLSPHMKMDAITSAPLYHHHHQQPQASGGSNTVPTTFYGSSGFCYGVGENGNSHSPLTVMPLKSDGSLCIMEALSRSQTPGMVPTSSPKLEDFLGASMGCHEYGGQESELAMSLSLDSIYYSTQNAGDPHQANRDHSLELLSHPYYSGLDCHGMYQSSPLEEENKETGNVTACSSQIVEYSAQHAVEQKMNCNIVNDRGNAASGGGSVGCGGELQSLSLSMSPGSQSSCVTVPSQISPSGSDSVAGNGKKRGAAKMGQKQPMHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGAATHINFPVENYQVQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGANAVTNFDISRYDVERIMASNVLLAGDMARRNKDNDPRIEAIQCNNGESVQAAARNNNENVSDWKMVLHHPPQQEQNTNCDQKVMNCDTYRNAAFSIALQDLVGVDSLGSSYDSSKIGTHFSNPSSLVTSLSSSREASPEKTGPSLLFPKPPMETKIVNNLNSSGVSSWFPSPMRPASAINLSHLPVFAAWNDA*	647

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g4076	646	ProSiteProfiles	AP2/ERF domain profile.	402	460	IPR001471	GO:0003700\|GO:0006355
	Lja1g4076	646	Gene3D	AP2/ERF domain	402	462	IPR036955	GO:0003700\|GO:0006355
	Lja1g4076	646	Gene3D	AP2/ERF domain	299	368	IPR036955	GO:0003700\|GO:0006355
	Lja1g4076	646	SUPERFAMILY	DNA-binding domain	299	368	IPR016177	GO:0003677
	Lja1g4076	646	Pfam	AP2 domain	403	452	IPR001471	GO:0003700\|GO:0006355
	Lja1g4076	646	Pfam	AP2 domain	300	358	IPR001471	GO:0003700\|GO:0006355
	Lja1g4076	646	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT	17	644	-	-
	Lja1g4076	646	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	17	644	-	-
	Lja1g4076	646	CDD	AP2	401	462	IPR001471	GO:0003700\|GO:0006355
	Lja1g4076	646	CDD	AP2	299	367	IPR001471	GO:0003700\|GO:0006355
	Lja1g4076	646	SUPERFAMILY	DNA-binding domain	401	462	IPR016177	GO:0003677
	Lja1g4076	646	ProSiteProfiles	AP2/ERF domain profile.	300	366	IPR001471	GO:0003700\|GO:0006355
	Lja1g4076	646	SMART	rav1_2	300	372	IPR001471	GO:0003700\|GO:0006355
	Lja1g4076	646	SMART	rav1_2	402	466	IPR001471	GO:0003700\|GO:0006355
	Lja1g4076	646	MobiDBLite	consensus disorder prediction	252	288	-	-
	Lja1g4076	646	MobiDBLite	consensus disorder prediction	252	268	-	-
	Lja1g4076	646	PRINTS	Ethylene responsive element binding protein signature	442	462	IPR001471	GO:0003700\|GO:0006355
	Lja1g4076	646	PRINTS	Ethylene responsive element binding protein signature	301	312	IPR001471	GO:0003700\|GO:0006355
	Lja1g4076	646	MobiDBLite	consensus disorder prediction	580	602	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g4076	Lja-Chr1	51785780	51790134	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g4076	5	486	AP2-EREBP Transcription Factor Family	AT4G37750	54.651	2.85e-166	485

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-AP2	Lja1g4076		AP2	3.7e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g4076	K09285		-	gmx:100787223	846.654

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g4076	1	51785780	51790134	Lja1g4076	1	51785780	51790134	ECH
	Lja5g3054	5	59897411	59902041	Lja1g4076	1	51785780	51790134	PCT