Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4074 ATGGTGGACCCTTACGTGCTCGGATGGGCCATTTGCACCGTGCTCACCCTCATTGCTCTCTACAATTTGGTTTTCCCACGGACCGCTTCTTCCTCCTCCGATGCCGCCACCACCACTCAGACCACGGAGAACATCACAACGGCCTCCGGTGAATGCAGATCCTTCAACCGCAACGCCAACATTGACGTCATTGTCGTCGGAGCTGGTGTCGCTGGCGCCGCTCTCGCTCACACTCTCGGCAAGGATGGGCGTCAAGTACTTGTCATTGAAAGAGATCTGACTGAACCAGACCGGATTGTTGGAGAGTTGCTACAACCTGGAGGCTATCTCAAATTAATTGAACTGGGACTTGAAGATTGTGTGGAGAAAATTGATGCGCAGCAAGTCTTTGGATATGCGCTTTTCAAGGATGGAAAACACACACGACTCTCTTATCCCTTGGAAAAGTTTCACTCAGATATTGCTGGCAGAAGCTTTCACAATGGGCGTTTTATTCAGAGGATGAGACAGAAAGCTGCCTCCCTTTCCAATGTACATTTGGAGCAAGGAACAGTTACTTCCCTACTTGAAGAGAAGGGTACAATTAAAGGTGTGCAGTACAAAACAAAAGATGGTCAGGAATTATCAGCGTGGGCTCCTCTTACCATTGTTTGTGATGGCTGTTTCTCAAACTTGCGTCGCTCTCTTTGTAATCCTAAGGTAGATGTTCCCTCTTGTTTTGTTGGCTTAGTTTTGGAGAATTGTGAACTTCCATGTGCAAATCATGGGCACGTCATACTGGGAGATCCTTCACCAGTTCTATTCTATCCTATAAGTAGTACAGAGGTTCGCTGCCTGGTTGATGTTCCTGGTGAGAAAGTTCCATCTATTTCCAATGGTGAAATGGCCAAGTATTTGAAGACAGTGGTAGCTCCCCAGGTTCCCCCTGAGATTTATGATGCTTTCATAGCTGCAGTGGACAAAGGCCACATAAGAACAATGCCAAACAGAAGCATGCCAGCAGCTCCTTTTCCTACTCCCGGAGCGCTTCTAATGGGAGATGCATTCAACATGCGCCATCCTCTGACGGGTGGTGGAATGACTGTGGCATTATCTGATATAGTGGTGCTGCGAAATCTTCTCAAGCCTTTGCGTGACTTGAATGATGCACCCAAGCTATGCAAATACCTTGAATCCTTCTATACCCTGCGTAAGCCTGTGGCATCCACCATAAACACGTTGGCAGGAGCCCTTTACAAGGTTTTTTGCGCATCACCTGATCCGGCACGGAAGGAAATGCGCCAAGCTTGCTTCGATTATCTGAGTCTTGGAGGTTTGTTCTCAGAAGGGCCAGTCTCTTTGCTTTCAGGATTAAACCCTCGGCCCTTGAGCTTGGTTCTCCATTTCTTTGCCGTTGCAATATATGGGGTTGGCCGTTTACTCCTACCATTTCCTTCCCCTAAACGCATATGGATTGGACTCAGATTAATCACTAGTGCATCTGGAATCATCTTGCCCATTATTAAGGCAGAAGGAGTTCGGCAGATGTTCTTCCCTGCAACTGTACCAGCTTATTACAGAACTCCGCCGACTGCATGA 1578 0.4766 MVDPYVLGWAICTVLTLIALYNLVFPRTASSSSDAATTTQTTENITTASGECRSFNRNANIDVIVVGAGVAGAALAHTLGKDGRQVLVIERDLTEPDRIVGELLQPGGYLKLIELGLEDCVEKIDAQQVFGYALFKDGKHTRLSYPLEKFHSDIAGRSFHNGRFIQRMRQKAASLSNVHLEQGTVTSLLEEKGTIKGVQYKTKDGQELSAWAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCELPCANHGHVILGDPSPVLFYPISSTEVRCLVDVPGEKVPSISNGEMAKYLKTVVAPQVPPEIYDAFIAAVDKGHIRTMPNRSMPAAPFPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLRDLNDAPKLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRIWIGLRLITSASGIILPIIKAEGVRQMFFPATVPAYYRTPPTA* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4074 525 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 524 - -
Lja1g4074 525 Pfam NAD(P)-binding Rossmann-like domain 65 91 - -
Lja1g4074 525 Gene3D - 53 433 IPR036188 -
Lja1g4074 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 62 84 - -
Lja1g4074 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 339 354 - -
Lja1g4074 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 211 226 - -
Lja1g4074 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 354 370 - -
Lja1g4074 525 PANTHER SQUALENE MONOOXYGENASE 1 524 IPR040125 GO:0004506|GO:0016126
Lja1g4074 525 SUPERFAMILY FAD/NAD(P)-binding domain 61 436 IPR036188 -
Lja1g4074 525 Pfam Squalene epoxidase 212 484 IPR013698 GO:0004506|GO:0016021|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4074 Lja-Chr1 51723523 51728380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4074 17 524 Miscellaneous Gene Families AT1G58440 75.442 0.0 800
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4074 K00511 - gmx:100804406 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4074 1 51723523 51728380 Lja1g4074 1 51723523 51728380 ECH
Lja5g3047 5 59747452 59751519 Lja1g4074 1 51723523 51728380 PCT