Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4070 ATGAACATTGCTGCTCTTTTAACTTCTGCTGGAGTTAATATTGCTGTGTGCGTGGTGCTCTTTTCACTCTATTCAATATTAAGGAAACAACCCAACAATGTTAAAGTGTACTTTGGAAGAAGGGTAGCCTCTCGACATTCAAAAAGCCTTGGTCTTTGCTTGGAAAGATTTGTTCCATCTCCTACATGGGTAAAGAAAGCCTGGGCAACAACTCAGGATGAAATGCTGAATATCGGTGGCTTGGATGCTGTGGCTTTTAGTAGGTTGCTTGTGTTCAGTATTCGAGTATTTTCTGTCGTTGCAGTCATTGGAACTTTTCTAGTGCTTCCAGTGAATTACTATGGTCAGAGTAGAACACGCAAGAATTTACATCTTGAGTCACTGGACGCTTTTACCATTGAGAATGTAAAGAAAGGATCCACGTGGCTTTGGGCTCATTGTCTCGCATTATACATCATAACATTGACAACTTGTTCTCTTCTTTACATAGAATTTAGGAGCATTACTAATTTGCGGCTAGCACATATCACTGGATCTCCACTGAATCCAAGTCATTTTGCAATTCTTGTCCGAGGAATACCCTGGTCTTCAAAAGTATCATACAGTGACACAGTAAAAAAGTTTTTCTCTTACTATTATGCATCAACATATTTGTCACACCAAATAGTGTATGACTCTGGTGCAGTTCAAAAACTGAAGGATGATGCAGAATATGCATGTAAGATGTTCAGCGGAAGTTTGGAACAGACTTGTAAGCCAAGCTTGGCGCAATGTTACTTTTGTGGAGGGACCACAAATTTTAAGCTAATTTCTCAAGACATAGATAGTATACATGCAAGAACAGGCTACACTGACATTCATATAGATGCAAGAAAAAAGGAATGCGCAGCTGCTTTTGTGTTCTTTAAAAGTCGGTATGCTGCTCTTATGGCTGCACAAAATCTTCAAACATCAAATCCTATGTTATGGGTCACAGACCAAGCTCCTGAACCACATGATGTTTACTGGTCTAAACTGTGCATACCATATAGGCAACTTTGGATCCGTAAGATAGCCACACTTGTGGCTTCTATGACCTTCGTGCTTGTATTTCTCATCCCTGTCACATTTGCACAATGCTTGACTCAACTAGACAAGCTTGAGAAAATGTTCCCTTTTCTGACTGGGATACTTAAAAAGAAATTTATGATTCAGCTGGTGACTGGTTACTTGCCAAGTGTGATTTTGGTTTTGTTTTTATTAGCTGTTCCACCATTGATGATGCTATTTTCAGCGGTGGAGGGGCCTATTTCCCGTAGTGGAAGGAAAAGAAGTGCTTGCTGTAAAGTTTTGTTCTTCACAATTTGGAATGTGTTTTTCGTTAATGTTTTTGCCGGGTCTGTAATCAGCCAACTCTCAGTCTTTACTAATATAACAGAACTAACTGCCCAACTTGCCCAGGCAGTCCCGGTGCAGGCTGCCTTCTTCACAACATATGTTCTATCATCTGGTTGGGCAAGTTTGGCTTTTGAAATTATACAACCGTTTCCTCTTTTATGCAATTTGTTCCAGAGATTGGTCTTCTGTTCCCAGGAGGATTCATATAATGGCAACCTAACTTTTCCATACCATACAGAAGTTCCAAGGATCTTGCTGTTTGGATTCCTTGGCTTCACCTGTTCTATTCTGGCACCCCTCATACTGCCCTTCTTATTGTTTTACTTTTCCCTTGCATACCTCGTTTACCGAAACCAGATTATCAATGTATATATTAAAAAATATGATGGCGGGGGACACTTATGGCCCATTGCTCACAACACAACGATTTTTTCATTGGTCTTCTCTCAAGTTATTGCACTTGGGGTGTTTGGACTGAAAGACTCAACAATTGCATCTGGATTTACTATTCCTCTCCTGATTGGTACCATTCTATTTCACCAATATTGTAGGCAGAGATTTCTTCCGGTATTTAAGAACAATGCAGCACAGGTTCTTATTGATTTGGATCAGAGGGATGAGCATTGCGGGAGGCTAGAAGAGATTTATGAACAATTGCATTCAGCTTACTGCCAGTTCACGAGTTCTGGTCAATCTGAATGCTCCAGCCATCAAAGCAGGGAGCATATTCAGACTCCAGAAGAAGATTCAAAGACAGGTTTGCTTCTAAGCAATGGTGGTGGTAATTTCACTTTTCTATCTAAAATTAAAAATATAATAGCTTGTCTATGTTTGGTTTTCATCTTTCAGGCTTGGAAATCATCCAACAAGATATATCATGGCCACCTCATCGTGTTTGAATTGTTGGAATGTAATAGAGTTTTTAGGCTTGTACATGTTAATGATGAAGATAATCCATATTGCGTATATCTGCGAAGAAAATAG 2361 0.3964 MNIAALLTSAGVNIAVCVVLFSLYSILRKQPNNVKVYFGRRVASRHSKSLGLCLERFVPSPTWVKKAWATTQDEMLNIGGLDAVAFSRLLVFSIRVFSVVAVIGTFLVLPVNYYGQSRTRKNLHLESLDAFTIENVKKGSTWLWAHCLALYIITLTTCSLLYIEFRSITNLRLAHITGSPLNPSHFAILVRGIPWSSKVSYSDTVKKFFSYYYASTYLSHQIVYDSGAVQKLKDDAEYACKMFSGSLEQTCKPSLAQCYFCGGTTNFKLISQDIDSIHARTGYTDIHIDARKKECAAAFVFFKSRYAALMAAQNLQTSNPMLWVTDQAPEPHDVYWSKLCIPYRQLWIRKIATLVASMTFVLVFLIPVTFAQCLTQLDKLEKMFPFLTGILKKKFMIQLVTGYLPSVILVLFLLAVPPLMMLFSAVEGPISRSGRKRSACCKVLFFTIWNVFFVNVFAGSVISQLSVFTNITELTAQLAQAVPVQAAFFTTYVLSSGWASLAFEIIQPFPLLCNLFQRLVFCSQEDSYNGNLTFPYHTEVPRILLFGFLGFTCSILAPLILPFLLFYFSLAYLVYRNQIINVYIKKYDGGGHLWPIAHNTTIFSLVFSQVIALGVFGLKDSTIASGFTIPLLIGTILFHQYCRQRFLPVFKNNAAQVLIDLDQRDEHCGRLEEIYEQLHSAYCQFTSSGQSECSSHQSREHIQTPEEDSKTGLLLSNGGGNFTFLSKIKNIIACLCLVFIFQAWKSSNKIYHGHLIVFELLECNRVFRLVHVNDEDNPYCVYLRRK* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4070 786 Pfam Late exocytosis, associated with Golgi transport 6 163 IPR032880 -
Lja1g4070 786 Pfam Calcium-dependent channel, 7TM region, putative phosphate 349 616 IPR003864 GO:0016020
Lja1g4070 786 PANTHER PROBABLE MEMBRANE PROTEIN DUF221-RELATED 2 711 IPR045122 GO:0005227
Lja1g4070 786 Pfam Cytosolic domain of 10TM putative phosphate transporter 186 337 IPR027815 -
Lja1g4070 786 PANTHER ERD (EARLY-RESPONSIVE TO DEHYDRATION STRESS) FAMILY PROTEIN 2 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4070 Lja-Chr1 51662461 51670705 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4070 K21989 - gmx:100789875 1116.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4070 1 51662461 51670705 Lja1g4070 1 51662461 51670705 ECH
Lja5g3044 5 59588276 59597837 Lja1g4070 1 51662461 51670705 PCT