Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4069 ATGGGAAGAGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGCCCTTGGTCTCCAGAAGAAGATGCCAAGCTCAAGTCCTACATCGAACAGCACGGAACCGGTGGTAACTGGATCGCTTTGCCCCAAAAGATTGGCCTTAAAAGATGTGGCAAGAGTTGCAGACTCAGGTGGCTAAACTATCTTCGCCCTAATCTCAGGCACGGTAGCTTCTCAGAAGAAGAAGACAACATTATTTGCAGCCTTTACGTTAGTATTGGAAGCAGGTGGTCTGTGATTGCAGCTCAATTGCCAGGAAGAACTGATAATGATATAAAGAACTACTGGAACACAAGGCTGAAGAAGAAGCTTCTAGGGAAGCAGCGTAAAGAACAACAACAACAACACGCACGTAATAAAGGCATCAAGCATGAAATTAGCAATAGATCATCAAGTGGGGATCAATATTCCTCATCTTCTTTGGTTGTAAACAACAATAACATTACTCAACAGCCATATTCTTGGCCACAGGTTATGCCTGTGTTGCCACAATTTCCTTACACAAACCAAGGACCGAGTTTCAATGACCAAGACTCTATTAAGAAACTTCTAATCAAGCTTGGAGGAAGATTCTCTGATGATTACTATCACGAACCCGTCGTAGATGTGTTGAATAATAATCTTCAATTCCCTGATGGTCTTCCTCCAACACAACAAATTCATGAAGAACAAGTCCATGTTGTTGGCTCTTCAGGTGGTTGCAACATAAACTCCATTAACAACAGCAACGAAGTGCAAGGAAGTTTTGCAGGAGAAGGAAGTTTCTTAGAAATGTTGGGGGAAATGGAATCTATTGAACATTACCAACAAAGGTTAAGTGGGATAGAGTGTTTCTATGGGGAGGACATGAACATGATCAACGGTGATAAGATCATAGGGTCTTCCAGCTGTAGCCAAAGTACTAACTGGGGTGACACAAATAGTAGCAGTCTGATATATTCTTCCCCTCCTCTTGTTGCTTCAAATTACCAAGAGTCGACGCCACAAGAATGCGCATTTCGAGAGCAGAACTACCCGGGGGCGCAATAG 1068 0.4307 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLRHGSFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQQQHARNKGIKHEISNRSSSGDQYSSSSLVVNNNNITQQPYSWPQVMPVLPQFPYTNQGPSFNDQDSIKKLLIKLGGRFSDDYYHEPVVDVLNNNLQFPDGLPPTQQIHEEQVHVVGSSGGCNINSINNSNEVQGSFAGEGSFLEMLGEMESIEHYQQRLSGIECFYGEDMNMINGDKIIGSSSCSQSTNWGDTNSSSLIYSSPPLVASNYQESTPQECAFREQNYPGAQ* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4069 355 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lja1g4069 355 MobiDBLite consensus disorder prediction 118 153 - -
Lja1g4069 355 CDD SANT 16 62 IPR001005 -
Lja1g4069 355 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lja1g4069 355 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lja1g4069 355 Gene3D - 69 142 - -
Lja1g4069 355 SMART sant 67 115 IPR001005 -
Lja1g4069 355 SMART sant 13 64 IPR001005 -
Lja1g4069 355 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lja1g4069 355 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lja1g4069 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lja1g4069 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lja1g4069 355 PANTHER TRANSCRIPTION FACTOR MYB36-LIKE 1 336 - -
Lja1g4069 355 PANTHER OS09G0431300 PROTEIN 1 336 - -
Lja1g4069 355 MobiDBLite consensus disorder prediction 120 140 - -
Lja1g4069 355 CDD SANT 70 113 IPR001005 -
Lja1g4069 355 Gene3D - 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4069 Lja-Chr1 51655864 51657833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4069 1 327 MYB Transcription Factor Family AT3G49690 47.941 1.82e-88 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g4069 Myb_DNA-binding 2.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4069 K09422 - gmx:778079 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4069 1 51655864 51657833 Lja1g4069 1 51655864 51657833 ECH
Lja1g4069 1 51655864 51657833 Lja5g3034 5 59325168 59326893 ECH
Lja5g3042 5 59565008 59566582 Lja1g4069 1 51655864 51657833 PCT