LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g4063	ATGTCTGGTGAAACAATGGAAAACTTACAGAAGATCCATGCAGGAAACCACTCAGAGAAGAAAACAAACACAGAATGTCTTTCCACTGATGATGAAAACATTATAATAAATCCTCAGTTTGAGGGTGGCCTGAACAGTTGGTCTGGAAGAGGCTGCAAGATTGTGTTACATGATTCCATGGGAGGTGGTAAAATACTTCCAAAAGTTGGGAAATTCTTTGTAGCTGCAACAGAACGCACGCAAACCTGGAATGGAATTCAGCAGGAGATCACCGGAAGAGTGCAGCGCAAGCTAGCATATGAGATCACTGCTTTGGTTAGGATATTTGGGAACAATGTCACTACTTCTGATGTGCGAGCTACATTGTGGGTTCAAACACCGGATCTTCGAGAGCAGTACATAGGCATTGCCAATGTGCAGGCAACAGATAAAGATTGGGTTGAAATGCAGGGAAAGTTCCTTCTCAATGGCTCCCCTTCAAAAGTTGTTCTTTATTTAGAAGGTCCCCCACCAGGAATTGACATTCTTCTCAATACTTTGGTTGTAAAGCATGCAGCTAAAACACCACCTTCATCGCCCCCAGATTTTGAGAATGCTGCTTTTGGTGCTAACATAATTGAGAACAGTGATCTCGCTGATGGCACCAATGGCTGGTTTCCCCTTGGTAACTGCACTTTGAGTGTTGCAACTGGTTCGCCTCGTATAATTCCACCAATGGCAAGAGACTCTCTTGGCCCCCATGAGTCCTTAAGTGGACGCTACATCCTTGTAACCAACCGCACACAAACATGGATGGGTCCTGCTCAAATGATCACTGAGAAGTTGAAACTCTTCTTAACTTATCAAGTTTCTGCTTGGGTCAGGATAAGCTCAGGATCAAGTGGGCCTCAAAATGTGGGTATTTCCCTCAGTGTTGACAACCAGTGGGTGAATGGAGGACAAACTGAGGTTGCTGATAGCAGGTGGCATGAAATTGGTGGGTCCTTTAGACTTGAAAAACAACCATCTAAGGTTATGGTTTATATTCAAGGTCCTGCTTCTGGTGTTGATCTAATGGTTGCTGGACTTCAAATTTTTCCTGTGAATAGAGAGGCAAGGTTTGCATACTTAAGGAGGCAAACAGACAAGATTCGTAAGCGTGATGTTACTCTAAAATTCTCCGGGCTAGACTCTTGTGGGTACACCTTTGTGAAAGTTAGACAAACACAGAACGATTTTCCAATTGGATCATGCATCAACAGAACAAATATTGACAATGAAGACTTCGTTGACTTCTTTGTGAAACATTTCAACTGGGCTGTGTTTGGCAACGAGTTGAAGTGGTATTGGACTGAACCACAACAAGGAAAATTAAACTACAAGGATGCTGATGACATGTTAGACTTGTGTCAGAAGCACAACATAGAAACTCGTGGTCATTGCATATTCTGGGAAGTGGATGGAACTGTTCAACCATGGATCAAAGCACTGAATAAAAATGATTTGATGATAGCTGTCCAAAATCGCTTAACTAGCTTATTGAATCGCTACAAAGGAAAGTTCAGACACTATGATGTCAACAATGAGATGTTGCATGGTTCATTTTATCAGGATAGACTAGGCAAAGATATCAGAGCAATCATGTTCAAAACTGCACACCAATTAGATCCATCTGCTACCCTTTTTTTGAATGATTACCATGTTGAAGATGGAGGTGACACAAGATCATCTCCAGAAAAGTACATTCAACAAACAATTGGTCTGCAAGATCAAGGTGCCCCAGTTGGTGGAATTGGAATTCAAGGTCACATAGATAGTCCTGTTGGGCCTATTGTTTGTTCTGCACTTGACAAATTGGGAACTCTTGGTCTTCCAATCTGGTTCACTGAGCTTGATGCGTCTTCCACTAATGAATATGTTAGAGGTGATGATCTTGAAGTTATGATGAGGGAAGCTTTTGCACACCCTGCTGTGGATGGTGTAATGCTATGGGGGTTTTGGGAATTGTTTATGAGCAGGGAAAATTCACACTTAGTGAATGCTGAAGGTGAGATCAATGAAGCTGGGAAAAGGTTCCTTGCTCTTAAACAAGAGTGGTTGTGTCACACACATGGACATATTGATGAGCAAGGAGAATTCAGTTTTAGAGGATTTAGTGGGACATATGAAGTGGAAGTTGTGACATTAGGAGAGAAAATTTGTAAGACATTTGTTGTTGACAAGGGTGAATCGTCAATTGTTGTGTCAATTGAATTATAA	2238	0.4178	MSGETMENLQKIHAGNHSEKKTNTECLSTDDENIIINPQFEGGLNSWSGRGCKIVLHDSMGGGKILPKVGKFFVAATERTQTWNGIQQEITGRVQRKLAYEITALVRIFGNNVTTSDVRATLWVQTPDLREQYIGIANVQATDKDWVEMQGKFLLNGSPSKVVLYLEGPPPGIDILLNTLVVKHAAKTPPSSPPDFENAAFGANIIENSDLADGTNGWFPLGNCTLSVATGSPRIIPPMARDSLGPHESLSGRYILVTNRTQTWMGPAQMITEKLKLFLTYQVSAWVRISSGSSGPQNVGISLSVDNQWVNGGQTEVADSRWHEIGGSFRLEKQPSKVMVYIQGPASGVDLMVAGLQIFPVNREARFAYLRRQTDKIRKRDVTLKFSGLDSCGYTFVKVRQTQNDFPIGSCINRTNIDNEDFVDFFVKHFNWAVFGNELKWYWTEPQQGKLNYKDADDMLDLCQKHNIETRGHCIFWEVDGTVQPWIKALNKNDLMIAVQNRLTSLLNRYKGKFRHYDVNNEMLHGSFYQDRLGKDIRAIMFKTAHQLDPSATLFLNDYHVEDGGDTRSSPEKYIQQTIGLQDQGAPVGGIGIQGHIDSPVGPIVCSALDKLGTLGLPIWFTELDASSTNEYVRGDDLEVMMREAFAHPAVDGVMLWGFWELFMSRENSHLVNAEGEINEAGKRFLALKQEWLCHTHGHIDEQGEFSFRGFSGTYEVEVVTLGEKICKTFVVDKGESSIVVSIEL*	746

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g4063	745	Gene3D	Glycosidases	392	699	-	-
	Lja1g4063	745	Pfam	Carbohydrate binding domain	33	169	IPR003305	GO:0016798
	Lja1g4063	745	Pfam	Carbohydrate binding domain	203	347	IPR003305	GO:0016798
	Lja1g4063	745	PANTHER	GLYCOSYL HYDROLASE	20	745	IPR044846	GO:0004553\|GO:0005975
	Lja1g4063	745	PANTHER	ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN	20	745	-	-
	Lja1g4063	745	SUPERFAMILY	Galactose-binding domain-like	31	185	IPR008979	-
	Lja1g4063	745	MobiDBLite	consensus disorder prediction	1	23	-	-
	Lja1g4063	745	PRINTS	Glycosyl hydrolase family 10 signature	584	596	IPR001000	GO:0004553\|GO:0005975
	Lja1g4063	745	PRINTS	Glycosyl hydrolase family 10 signature	470	482	IPR001000	GO:0004553\|GO:0005975
	Lja1g4063	745	PRINTS	Glycosyl hydrolase family 10 signature	552	563	IPR001000	GO:0004553\|GO:0005975
	Lja1g4063	745	Pfam	Glycosyl hydrolase family 10	402	659	IPR001000	GO:0004553\|GO:0005975
	Lja1g4063	745	Coils	Coil	671	691	-	-
	Lja1g4063	745	SUPERFAMILY	Galactose-binding domain-like	202	362	IPR008979	-
	Lja1g4063	745	SUPERFAMILY	(Trans)glycosidases	397	695	IPR017853	-
	Lja1g4063	745	Gene3D	-	27	185	-	-
	Lja1g4063	745	Gene3D	-	197	359	-	-
	Lja1g4063	745	ProSiteProfiles	Glycosyl hydrolases family 10 (GH10) domain profile.	393	688	IPR001000	GO:0004553\|GO:0005975
	Lja1g4063	745	SMART	glyco_10	439	689	IPR001000	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g4063	Lja-Chr1	51442354	51446183	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g4063	17	745	Glycoside Hydrolase	AT1G58370	72.578	0.0	1142

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g4063	-		-	gmx:100784250	1318.52

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g4063	1	51442354	51446183	Lja1g4063	1	51442354	51446183	ECH
	Lja5g3036	5	59346882	59353991	Lja1g4063	1	51442354	51446183	PCT