Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02063 ATGTTGGACACCTACGTGTTTGGATGGATCATATGCGCCGTGCTGAGCATATTTGCGATTCACAATTTCGTTTTCGCGGGGAAGAAATGTCGCGCTTCGTCGGAGACCGATGCCGCTCTGTGCGCCGAAAACATCACTACAGCCGCCGGAGAATGCAGATCCTCGAAGCGCGACGGCGACGTTGACGTTATAATTGTCGGAGCTGGCGTCGCCGGCTCCGCTCTGGCTTACACTCTAGGCAAGGATGGACGTCAAGTACTAGTCATTGAAAGAGATCTGAGTGAACCAGACAGAATTGTTGGAGAGTTGCTTCAGCCCGGAGGCTATCTCAAGTTAATTGAGCTGGGACTTGAAGATTGTGTGGATAAAATTGATGCTCAACTAGTGTTTGGTTATGCTCTTTTCAAGGATGGGAAACACACAAGACTCTCTTATCCGTTGGAAAAGTTTCACTCTGATGTTGCTGGCAGAAGCTTTCACAATGGGCGTTTTATTCAGAGAATGAGAGAAAAGGCTGCCTCCCTTCCCAATGTAAGACTGGAGCAAGGAACAGTTACTTCCCTACTTGAAGAGAAGGAGGTAATAAAAGGCGTTCAGTACAAAACCAAGGATAGTCAAGAATTATCCGCGTGTGCACCCTTTACCATTGTTTGTGATGGCTGTTTTTCAAACTTGCGTCGTTCTCTTTGTAATCCTAAGGTAGATATACCCTCTTGTTTTGTTGGCCTACTTTTGGAGAATTGTGAACTTCCTTGTGCAAATCACGGCCATGTCATACTGGGAGATCCTTCGCCTGTTCTGTTCTATCCAATAAGTAGTACAGAAATCCGCTGTCTGGTTGATGTTCCTGGTCAGAAAGTTCCGTCTATTTCCAATGGTGAAATGGCTAAGTATTTGAAGACAATGATAGCTCCACAGGTTCCTCATGAGCTTCGTGACGCATTCATAGCTGCAGTGGACAAAGGCAGTATCAGGACAATGCCAAACAGAAGCATGCCAGCAGCTCCTTGTCCTACTCCCGGAGCCCTGCTTATGGGAGATGCATTCAACATGCGCCATCCTCTAACGGGGGGTGGCATGACTGTGGCGTTATCTGATATAGTAGTGCTGCGAAATCTTCTTAGGCCTTTGCGTGATCTGAATGATGCACCCACCCTTTGCAAATACCTTGAATCCTTTTATACCTTGCGCAAACCTGTGGCGTCCACTATAAATACGCTGGCGGGAGCTCTTTATAAGGTTTTTTGCGCCTCACCTGATCCAGCGAGGAAGGAAATGCGTCAAGCTTGTTTCGATTATCTTAGTCTTGGAGGTCAATTCTCGGAAGGACCGATCTCTCTGCTCTCGGGATTAAATCCTCGGCCCTTGAGCCTGGTTGTACATTTCTTTGCTGTTGCAATATACGGTGTTGGCCGTTTACTGCTGCCATTTCCTTCACCTAAACGGATATGGATTGGATTTCGATTAATTTCTAGTGCATCCGGAATCATCATGCCAATAATTAAGGCAGAAGGAGTCCGTCAGATGTTCTTCCCTGCAACAGTTCCAGCTTACTACCGAAAGTCCCTGGCTGCTTAA 1578 0.4683 MLDTYVFGWIICAVLSIFAIHNFVFAGKKCRASSETDAALCAENITTAAGECRSSKRDGDVDVIIVGAGVAGSALAYTLGKDGRQVLVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVDKIDAQLVFGYALFKDGKHTRLSYPLEKFHSDVAGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEEKEVIKGVQYKTKDSQELSACAPFTIVCDGCFSNLRRSLCNPKVDIPSCFVGLLLENCELPCANHGHVILGDPSPVLFYPISSTEIRCLVDVPGQKVPSISNGEMAKYLKTMIAPQVPHELRDAFIAAVDKGSIRTMPNRSMPAAPCPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLRPLRDLNDAPTLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGQFSEGPISLLSGLNPRPLSLVVHFFAVAIYGVGRLLLPFPSPKRIWIGFRLISSASGIIMPIIKAEGVRQMFFPATVPAYYRKSLAA* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02063 525 Pfam Squalene epoxidase 212 484 IPR013698 GO:0004506|GO:0016020|GO:0050660
Lapu9g02063 525 Pfam NAD(P)-binding Rossmann-like domain 65 91 - -
Lapu9g02063 525 PANTHER SQUALENE MONOOXYGENASE 26 521 IPR040125 GO:0004506|GO:0016126
Lapu9g02063 525 Gene3D - 54 430 IPR036188 -
Lapu9g02063 525 SUPERFAMILY FAD/NAD(P)-binding domain 60 435 IPR036188 -
Lapu9g02063 525 FunFam Squalene monooxygenase 2 55 435 - -
Lapu9g02063 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 62 84 - -
Lapu9g02063 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 339 354 - -
Lapu9g02063 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 354 370 - -
Lapu9g02063 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 211 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02063 Lapu-Chr9 35410527 35414844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02063 43 522 Miscellaneous Gene Families AT1G58440 78.216 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02063 K00511 - gmx:100820031 912.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02063 9 35410527 35414844 Lapu9g02063 9 35410527 35414844 ECH
Lapu8g00799 8 26096075 26101546 Lapu9g02063 9 35410527 35414844 PCT