LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu9g02055	ATGGGAGATGGGAAAATTCTTCCGAAGTCTGGTAAATTCTTTGCATCTGCAACAGAACGTACCCAAAGCTGGAACGGGATTCAGCAGGAGATCACTGGAAGAGTGCAGCGCAAGCTTGCCTACGAGGTTACTGCATTAGTTAGGATATTTGGGAACAATGTCACCACTTCTGATGTAAGGGCTACTTTGTGGGTTCAAGCACCAGATCTTCGGGAGCAGTATATAGGCATTGCCAATGTGCAGGCAACAGATAAAGATTGGGTTCAAATGCAGGGAAAATTCCTTCTAAATGGTTCCCCATCAAAAGTAGTGGTTTATTTAGAAGGTCCCCCTCCTGGCACTGACATTCTTGTCAATACTTTGGTTATAGAACATGCAGCTAAAACACCACCTTCACCACGACCAGATTGTGAGATAGCTGCTTTTGGTGTTAACATAATTGAAAACAGTAATCTGGGTAATGGCACCAATGGATGGTTTCCGCTTGGTAGTTGTACTTTGAGCGTTGGAAGTGGTTCACCGCGTATAATTCCACCAATGGCAAGAGACTCTCTAGGGCCTCACGAATCATTGAGTGGGCGCTACCTCCTTGTAACCAATCGCACACAAACATGGATGGGTCCTGCTCAGATGATCACTGAGAAACTGAAACTCTTTCTAACTTATCAAGTATCTGCTTGGGTGAGGATCGGTTCCGGATCAACTGGGCCTCAGAATGTTAATGTTGCCCTTAGTGTTGATAACCAGTGGGTCGACGGGGGACAAGTTGAGGTTGCTGATGGCAGGTGGCACGAAATTGGTGGGTCTTTTAGAATTGAAAAGCAGCCATCTAAAGTTATGGTTTATATTCAAGGTCCTGCTTCTGGTGTTGATTTAATGATTGCTGGACTTCAAATTTTTGCTGTTGATAGACAAGCAAGGTTTAAGTATTTGAGGAGGCAGACAGACAAGATCCGTAAGCGTGATATTACCCTCAAATTCTCTGGGCTTGATTCAATTGGAAATCTTGGAACCTTGGTGAGAGTTAGACAAATACAAAATGATTTTCCCATAGGAACGTGCATTAGTAGAAGCAATATTGACAATGAAGACTTTGTTGACTTCTTTGTGAAACATTTTAACTGGGCTGTTTTTGGGAATGAGTTGAAGTGGTATTGGACTGAGCCACAACAAGGGAATCTGAATTACAAGGATGCTGATGAAATGCTAGACTTATGTCAGAAGAACAAGATAGACACCCGGGGCCATTGTATCTTCTGGGAAGTGGACGGCACTGTTCAGCAATGGATCAAATCACTAAATAAAACTGATTTGATGAAAGCTGTCCAAAACCGCCTGAATGACTTATTGACTCGCTACAAGGGTAAGTTCAGACACTATGATGTCAACAATGAAATGTTGCACGGTTCATTTTATCAGGATAGACTAGGTAAGGATATAAGGGCAAACATGTTCAAGACTGCACACCAGATAGATCCATCTGCTACACTTTTTGTGAATGACTATCATATTGAAGATGGATGTGACACCAGATCATCCCCAGAAAAGTACATTCAACATATTCTTGATTTGCAACAGCAAGGTGCCCCAGTTGGGGGAATAGGAATTCAAGGTCACATAGATAGCCCTGTGGGGCCTATTGTTTCTTCTGCCCTTGATAAATTGGGGACTCTTGGTATACCAATATGGTTTACTGAGCTTGATGTGTCTTCCACCAATGAATATGTCAGAGCTGATGATCTTGAAGTTATGCTGCGGGAAGCTTTGGCACACCCTGCCATAGATGGTGTAATGCTCTGGGGATTTTGGGAGTTGTTCATGAGCCGGGAAAATTCACACCTTGTGAATGCAGAAGGGGAACTCAATGAAGCTGGGAAAAGATTCCTTGCTCTCAAACAAGAGTGGTTGTCTCACAGCCATGGTTATGCTGATGAGCAAGGGCAATTCAGCTTCAGAGGCTTCAGCGGAACATACAACGTGGAAGTTGTGACCTTAGCACAGAAAGTTTCCAAGACATTCGTTGTTGACAAGGGTGACTCCTCACTGGTGGTATCAATCGATTTCTAA	2067	0.4335	MGDGKILPKSGKFFASATERTQSWNGIQQEITGRVQRKLAYEVTALVRIFGNNVTTSDVRATLWVQAPDLREQYIGIANVQATDKDWVQMQGKFLLNGSPSKVVVYLEGPPPGTDILVNTLVIEHAAKTPPSPRPDCEIAAFGVNIIENSNLGNGTNGWFPLGSCTLSVGSGSPRIIPPMARDSLGPHESLSGRYLLVTNRTQTWMGPAQMITEKLKLFLTYQVSAWVRIGSGSTGPQNVNVALSVDNQWVDGGQVEVADGRWHEIGGSFRIEKQPSKVMVYIQGPASGVDLMIAGLQIFAVDRQARFKYLRRQTDKIRKRDITLKFSGLDSIGNLGTLVRVRQIQNDFPIGTCISRSNIDNEDFVDFFVKHFNWAVFGNELKWYWTEPQQGNLNYKDADEMLDLCQKNKIDTRGHCIFWEVDGTVQQWIKSLNKTDLMKAVQNRLNDLLTRYKGKFRHYDVNNEMLHGSFYQDRLGKDIRANMFKTAHQIDPSATLFVNDYHIEDGCDTRSSPEKYIQHILDLQQQGAPVGGIGIQGHIDSPVGPIVSSALDKLGTLGIPIWFTELDVSSTNEYVRADDLEVMLREALAHPAIDGVMLWGFWELFMSRENSHLVNAEGELNEAGKRFLALKQEWLSHSHGYADEQGQFSFRGFSGTYNVEVVTLAQKVSKTFVVDKGDSSLVVSIDF*	689

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu9g02055	688	SUPERFAMILY	Galactose-binding domain-like	7	126	IPR008979	-
	Lapu9g02055	688	Gene3D	-	7	126	-	-
	Lapu9g02055	688	Gene3D	-	139	301	-	-
	Lapu9g02055	688	SUPERFAMILY	(Trans)glycosidases	339	639	IPR017853	-
	Lapu9g02055	688	SUPERFAMILY	Galactose-binding domain-like	143	303	IPR008979	-
	Lapu9g02055	688	Gene3D	Glycosidases	336	643	-	-
	Lapu9g02055	688	PRINTS	Glycosyl hydrolase family 10 signature	495	506	IPR001000	GO:0004553\|GO:0005975
	Lapu9g02055	688	PRINTS	Glycosyl hydrolase family 10 signature	413	425	IPR001000	GO:0004553\|GO:0005975
	Lapu9g02055	688	PRINTS	Glycosyl hydrolase family 10 signature	527	539	IPR001000	GO:0004553\|GO:0005975
	Lapu9g02055	688	ProSiteProfiles	Glycosyl hydrolases family 10 (GH10) domain profile.	336	631	IPR001000	GO:0004553\|GO:0005975
	Lapu9g02055	688	ProSitePatterns	Glycosyl hydrolases family 10 (GH10) active site.	559	569	IPR031158	-
	Lapu9g02055	688	SMART	glyco_10	382	632	IPR001000	GO:0004553\|GO:0005975
	Lapu9g02055	688	Pfam	Glycosyl hydrolase family 10	345	602	IPR001000	GO:0004553\|GO:0005975
	Lapu9g02055	688	FunFam	Endo-1,4-beta-xylanase A	337	639	-	-
	Lapu9g02055	688	Pfam	Carbohydrate binding domain	145	288	IPR003305	GO:0016798
	Lapu9g02055	688	Pfam	Carbohydrate binding domain	10	110	IPR003305	GO:0016798
	Lapu9g02055	688	Coils	Coil	614	634	-	-
	Lapu9g02055	688	PANTHER	GLYCOSYL HYDROLASE	130	680	IPR044846	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu9g02055	Lapu-Chr9	35290624	35293893	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu9g02055	1	688	Glycoside Hydrolase	AT1G58370	74.783	0.0	1108

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu9g02055	-		-	vum:124843466	1355.89

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lapu9g02055	9	35290624	35293893	Lapu9g02055	9	35290624	35293893	ECH
	Lapu8g00791	8	25957471	25962833	Lapu9g02055	9	35290624	35293893	PCT