Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00807 ATGGCCAATAATTCTCAGCCCTCCAGCATGCAGTTTCGGCCAGTCATTCAAGCTCAGCAAGGACAACCATTTGTCCCAATGAATTCACAACAATTTGGACCAGCAGGACATGCTATTCCTTCTTCAAATGTGGGAATGCCTGTCATTCAAGGTCAGCAGTTGCAGTATTCTCAACCAATGCAGCAGTTGACTCCAAGACCAATGCAGCCTGGTCATCTTGCTCCTTCATCACAAGCTATACCCATGCCATATATTCAGACAAACAGACCAATGACATCCATTCCACCCCATTCACAACAAACTGTTCCCGCTTTAAGCAATCATATGCCTGGCTTACCTGTTTCTGGAGCAGCTCCTCATTCTTCATATACTTTCACACCATCTTATGGTCAGCAGCATGATAATGTGAATGCATTGGCTCAATACCAGCATCCACCTCAAATGCTTGCTCCTCCTGGTGGTCAACCTTGGCCGTCTTCTGCGTCTCAGAGTGTTGCACCTGTTACACCTGTGCAGCCAGCTGGGTTACAATCATCTGGAGCTACTTTGACAGATGCCGTTACTAATGCTACTAACCAGCAATCCTTATCTGATTGGCAAGAGCACACTTCTGCAGATGGGAGAAGATATTACTACAACAAGAGGACAAGGCAATCAAGTTGGGAGAAACCTTTGGAATTGATGTCCCCTATTGAGAGAGCTGATGCATCGACTGTTTGGAAAGAATTCACTTCTTCAGATGGAAAAAAATATTATTACAACAAGGTTACTCAACAATCAACGTGGTCAATACCAGAGGAGCTTCAGTTGGCTCGTGAGCAGGCACAAAAAGCTGCAAACCAGGGAATGCAGTCAGAAACAAGTGATACACCCAATGCTGTTGTCTCTTCCATAGCGACATCAACAGCAGCTAATGCAGCTAGCTCGAACACTTCTTTGACATCAAATGGGCTTGCTTCCAGCCCATCTTCTGTCACACCAATTGCATCAAGCGATTCTCAGCAGTTGGTTTCTGGATCGTTTGGGACCTCTGTTTCACACTCTACAGTTACCTCAAGCACAACAGGAGTTGAACCAAGCAGTGTGGGAACTACAAGTGCTGCACCTATAGTAGTTGCAGGAAACTCAGGACTAGCTGAGAACTCACCTCAACTATCCAAAATGCCAGCCATTGTTGAAAATCAAACATCTCAAGATTTTGCTTCTGCGAACGGGTCTTCTCCTCAAGATATTGAGGAAGCTAAAAAAGCATTGCCTGTGGTTGGGAAAAATAATGTGATTCCACCTGAGGAGAAAACCAATGATGATGAAACCTTGGTATATGCAAATAAGCTGGAAGCAAAGAATGCATTTAAAGCGCTTCTGGAATCTGTGAATGTTCAGTCTGATTGGACCTGGGAACAGGCAATGAGAGAAATCATCAACGACAAAAGATATAATGCCCTAAAAACACTTGGTGAGCGAAAACAAGCTTTTAATGAGTATTTGGGACAAAGAAAGAAGCTGGAGGCTGAAGAAAGACGCATGAAGCAGAAAAGAGCCCGTGAAGAATTCACAAAGATGTTGGAAGAGTGTAAGGAACTTACATCCTCCATGAGATGGAGCAAAGTGGTTAGTATGTTTGAACATGATGAACGATTTAATGCCGTTGAAAGACCAAGAGACCGAGAAGATTTATTTGAAAGCTACATGGTGGAACTTGAGAGGAAGGAGAAGGAAAATGCGGCTGAGGAACACCGGCTGAATATAGCAGAATATAGAAAATTTCTGGAGTCCTGTGATTATGTGAAGGTGAATAGTCATTGGCGTAAAATCCAAGATCGGTTAGAGGATGATGATAGATACTTGCGACTTGAAAAAATTGATCGCTTGCTAGTTTTTCAGGACTATATTCGGGACTTGGAGAAAGAAGAAGAGGAACAAAGAAGAATACAGAAGGATCGAGTCCGTCGGGGTGAAAGGAAAAACCGTGATGCATTTCGCAAGTTGCTTGAAGAACATGTTGCTATGGGAATTCTTACTGCTAAAACTCAATGGCGAGAATATTGCTTGAAGGTCAGGGATTTACCTCAATATCAAGCTGTCGCATCAAATACTTCGGGTTCCACTCCAAAAGATTTGTTTGAGGATGTTGCAGAGGATCTTGAGAAACAGTATCATGAAGACAAGACACTCATAAAAGATACAATTAAGTCAGGCAAGATCATTGTACTGACTACATCAGTATTTGAGGAGTTTAAGGCTGCTGTGTTGGAAGATGCTGCATGCCAAACAATATCTGACATCAATTTAAAGCTTATATTTGAAGAGTTGTTAGAGAGAGCTAAAGAGAAGGAGGAGAAAGAAGCCAAGAAGCGCCAACGCCTTGCTGATGACTTTACTAACCTGTTATACACATTCAAGGATATTACTACTTCCTCAAAATGGGAGGATTGCAAGTCACTTTTTGAGGAGACTCAAGAGTACAGGTCAATTGGGGACGAAAGCTATGGTAGAGAAATTTTTGAGGAATACATCACATACTTGAAGGAAAAAGCAAAAGATAAGGAACGTAAGCGTGAAGAGGAAAAGGTCAAAAAGGAGAAAGAAAGGGAAGAGAAACGGAAGGAGAAGGAGAAAAAAGAAAAAGACAGAGAACGTGAAAAGGATAAGTCAAAGGAACGCCATAGGAAGGATGAAACAGATAGTGATAATCAAGAGATGGCAGACGTCCATGGTTACAAAGAGGAGAAGAAAAAAGAAAAGGATAAGGAAAGGAAGCATCGGAAAAGGCATCAGAGCAGTATAGATGATGTGGATTCTGAAAAGGAAGAGAAGGAAGAATCTAAAAAATCACGAAGGCATGGCAGTGAACGCAAGAAGTCTCGGAAGTATGCAAACTCTCCTGAATCAGACATTGAAAACCGGCACAGAAGACACAAGAGGGAGCACTGGGACGTATCTAGGAAAACTGGGGGGCATGAGGAACTTGAAGACGGAGAACTCGGTGACGATGTTGAAAACTAA 3006 0.4255 MANNSQPSSMQFRPVIQAQQGQPFVPMNSQQFGPAGHAIPSSNVGMPVIQGQQLQYSQPMQQLTPRPMQPGHLAPSSQAIPMPYIQTNRPMTSIPPHSQQTVPALSNHMPGLPVSGAAPHSSYTFTPSYGQQHDNVNALAQYQHPPQMLAPPGGQPWPSSASQSVAPVTPVQPAGLQSSGATLTDAVTNATNQQSLSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWKEFTSSDGKKYYYNKVTQQSTWSIPEELQLAREQAQKAANQGMQSETSDTPNAVVSSIATSTAANAASSNTSLTSNGLASSPSSVTPIASSDSQQLVSGSFGTSVSHSTVTSSTTGVEPSSVGTTSAAPIVVAGNSGLAENSPQLSKMPAIVENQTSQDFASANGSSPQDIEEAKKALPVVGKNNVIPPEEKTNDDETLVYANKLEAKNAFKALLESVNVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSMRWSKVVSMFEHDERFNAVERPRDREDLFESYMVELERKEKENAAEEHRLNIAEYRKFLESCDYVKVNSHWRKIQDRLEDDDRYLRLEKIDRLLVFQDYIRDLEKEEEEQRRIQKDRVRRGERKNRDAFRKLLEEHVAMGILTAKTQWREYCLKVRDLPQYQAVASNTSGSTPKDLFEDVAEDLEKQYHEDKTLIKDTIKSGKIIVLTTSVFEEFKAAVLEDAACQTISDINLKLIFEELLERAKEKEEKEAKKRQRLADDFTNLLYTFKDITTSSKWEDCKSLFEETQEYRSIGDESYGREIFEEYITYLKEKAKDKERKREEEKVKKEKEREEKRKEKEKKEKDREREKDKSKERHRKDETDSDNQEMADVHGYKEEKKKEKDKERKHRKRHQSSIDDVDSEKEEKEESKKSRRHGSERKKSRKYANSPESDIENRHRRHKREHWDVSRKTGGHEELEDGELGDDVEN* 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00807 1001 FunFam pre-mRNA-processing protein 40A isoform X1 443 498 - -
Lapu8g00807 1001 CDD WW 240 267 IPR001202 GO:0005515
Lapu8g00807 1001 SMART FF_2 786 841 IPR002713 -
Lapu8g00807 1001 SMART FF_2 579 633 IPR002713 -
Lapu8g00807 1001 SMART FF_2 444 498 IPR002713 -
Lapu8g00807 1001 SMART FF_2 653 714 IPR002713 -
Lapu8g00807 1001 SMART FF_2 511 566 IPR002713 -
Lapu8g00807 1001 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 193 788 IPR039726 GO:0045292
Lapu8g00807 1001 ProSitePatterns WW/rsp5/WWP domain signature. 240 265 IPR001202 GO:0005515
Lapu8g00807 1001 ProSiteProfiles FF domain profile. 651 714 IPR002713 -
Lapu8g00807 1001 Coils Coil 560 587 - -
Lapu8g00807 1001 SUPERFAMILY WW domain 198 232 IPR036020 GO:0005515
Lapu8g00807 1001 Gene3D FF domain 501 574 IPR036517 -
Lapu8g00807 1001 Gene3D FF domain 644 727 IPR036517 -
Lapu8g00807 1001 Gene3D FF domain 575 643 IPR036517 -
Lapu8g00807 1001 ProSitePatterns WW/rsp5/WWP domain signature. 199 224 IPR001202 GO:0005515
Lapu8g00807 1001 SUPERFAMILY FF domain 505 573 IPR036517 -
Lapu8g00807 1001 Coils Coil 839 888 - -
Lapu8g00807 1001 MobiDBLite consensus disorder prediction 273 292 - -
Lapu8g00807 1001 FunFam Pre-mRNA-processing protein 40A 500 573 - -
Lapu8g00807 1001 ProSiteProfiles WW/rsp5/WWP domain profile. 197 226 IPR001202 GO:0005515
Lapu8g00807 1001 SUPERFAMILY FF domain 779 848 IPR036517 -
Lapu8g00807 1001 SUPERFAMILY FF domain 571 640 IPR036517 -
Lapu8g00807 1001 ProSiteProfiles FF domain profile. 444 498 IPR002713 -
Lapu8g00807 1001 Coils Coil 627 647 - -
Lapu8g00807 1001 ProSiteProfiles FF domain profile. 579 633 IPR002713 -
Lapu8g00807 1001 SUPERFAMILY WW domain 239 272 IPR036020 GO:0005515
Lapu8g00807 1001 MobiDBLite consensus disorder prediction 850 1001 - -
Lapu8g00807 1001 Pfam WW domain 240 265 IPR001202 GO:0005515
Lapu8g00807 1001 Pfam WW domain 197 224 IPR001202 GO:0005515
Lapu8g00807 1001 Gene3D - 236 280 - -
Lapu8g00807 1001 Gene3D - 192 235 - -
Lapu8g00807 1001 Coils Coil 492 515 - -
Lapu8g00807 1001 ProSiteProfiles FF domain profile. 511 566 IPR002713 -
Lapu8g00807 1001 MobiDBLite consensus disorder prediction 923 947 - -
Lapu8g00807 1001 SUPERFAMILY FF domain 436 498 IPR036517 -
Lapu8g00807 1001 Coils Coil 922 942 - -
Lapu8g00807 1001 Gene3D FF domain 781 854 IPR036517 -
Lapu8g00807 1001 FunFam Pre-mRNA-processing protein 40A 574 642 - -
Lapu8g00807 1001 Pfam FF domain 655 710 IPR002713 -
Lapu8g00807 1001 Pfam FF domain 583 630 IPR002713 -
Lapu8g00807 1001 Pfam FF domain 791 838 IPR002713 -
Lapu8g00807 1001 Pfam FF domain 446 495 IPR002713 -
Lapu8g00807 1001 Pfam FF domain 513 563 IPR002713 -
Lapu8g00807 1001 MobiDBLite consensus disorder prediction 955 990 - -
Lapu8g00807 1001 MobiDBLite consensus disorder prediction 850 916 - -
Lapu8g00807 1001 Gene3D FF domain 444 499 IPR036517 -
Lapu8g00807 1001 CDD WW 197 226 IPR001202 GO:0005515
Lapu8g00807 1001 SUPERFAMILY FF domain 646 721 IPR036517 -
Lapu8g00807 1001 MobiDBLite consensus disorder prediction 308 363 - -
Lapu8g00807 1001 FunFam Pre-mRNA-processing protein 40A 780 853 - -
Lapu8g00807 1001 ProSiteProfiles WW/rsp5/WWP domain profile. 234 267 IPR001202 GO:0005515
Lapu8g00807 1001 SMART ww_5 235 267 IPR001202 GO:0005515
Lapu8g00807 1001 SMART ww_5 194 226 IPR001202 GO:0005515
Lapu8g00807 1001 FunFam Pre-mRNA-processing protein 40A 644 725 - -
Lapu8g00807 1001 Coils Coil 768 792 - -
Lapu8g00807 1001 MobiDBLite consensus disorder prediction 274 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00807 Lapu-Chr8 26226851 26241555 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00807 K12821 - gmx:100806019 1546.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g00807 8 26226851 26241555 Lapu8g00807 8 26226851 26241555 ECH