Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00802 ATGGGGGGTCAGGAAAATGCCATGGGGTTTCAACACGGAAATGAGAACATTCTGACTTGTCCATCTTCTGCTCTCAGTGGTGCCAATGTTAATGTTTCAGAAATGGCTATTAGTTCCGTGTCTATGGCCAAGCCTTCAGATGTAGCTAACCCTTTTCTTGCTTCTTCCGCCTGGGATCCACTTGTTTCCTTGAGTCAGGCTCAAACTTTTGGAGGCTCCTCAATGGTTTCTCATACCGAGTTTGCCAATGCCAACTCTTCTTACCCTCTTGTTCTGGAAAACCAAGGAATAAGCAGCACTTCCCACCTTGTTCAATACATGTCTGACTCAAATCTCGGGGGCATGGTCCCCAAGGTTCACTCCTATGCAACTAGGGGCTTCTCAGAAATGGTTGGTGCTGGTTCTTTTGGCCAACATGGGTCTGGTGACGTGGCTAACTCAGGGTATCCACCACATTATAATCCGATCAAGGAGGCTCACATTAATGGTGAACAATCTCAGGTTGAGGACTCAATTCCTGAAGAGGAAACACCAGGATCTGCTCCTAGTGGGAATAGAAGAAAGAGAGGGCTTGATCATAATTCTTCCTTCAGCCCAAATAAGAATGCTGAGACTGAAACTCTGAAGGATTCTCCGGGGAGGGCCTCTGATGGTCCAAAAGAACATGAAAAGAAGCCAAAAGTTGAGCAGAATAATAGTGCAGATTTGCGTGGCAAGCAATCAGTGAAGCAAGCTAAAGACAACAGTTCTCAAAGTGGAGAAGCTCCTAAAGAAAATTTCATTCACGTGAGAGCTAGAAGAGGACAAGCCACAAATAGCCATAGTCTTGCAGAAAGAGTGAGAAGAGAAAAGATTAGTGAGCGAATGAGGCTGCTTCAAGAACTTGTTCCAGGTTGCAACAAGATAACTGGCAAAGCCGTAATGCTGGATGAGATAATTAACTACGTGCAATCACTTCAGCAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACAGTGAACCCAGAACTGAACTTTGATGTAGACAGGATCCTATCCAAGGATATTCTTCAATCACGCATAGGACATGGAATTAGTGCATATGGTCCTGGTATCAATTCCTCTCACACATTCCCCAGTGGAAATTTCCATGGAACATTGGCTGGCATGCCTAGTACATCATCACAATTCCCTCCTTTGCCCCAGAATGTTTTGGACCATGAATTCCAAAGCTTCTATGGAATTGGATACGATTCTAATACAGCACTTGACAATTTGGGACCCAATGGGCGGTTGAAAACAGAGTTATAG 1290 0.4457 MGGQENAMGFQHGNENILTCPSSALSGANVNVSEMAISSVSMAKPSDVANPFLASSAWDPLVSLSQAQTFGGSSMVSHTEFANANSSYPLVLENQGISSTSHLVQYMSDSNLGGMVPKVHSYATRGFSEMVGAGSFGQHGSGDVANSGYPPHYNPIKEAHINGEQSQVEDSIPEEETPGSAPSGNRRKRGLDHNSSFSPNKNAETETLKDSPGRASDGPKEHEKKPKVEQNNSADLRGKQSVKQAKDNSSQSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVDRILSKDILQSRIGHGISAYGPGINSSHTFPSGNFHGTLAGMPSTSSQFPPLPQNVLDHEFQSFYGIGYDSNTALDNLGPNGRLKTEL* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00802 429 MobiDBLite consensus disorder prediction 233 256 - -
Lapu8g00802 429 Gene3D - 266 340 IPR036638 GO:0046983
Lapu8g00802 429 FunFam Basic helix-loop-helix transcription factor 266 338 - -
Lapu8g00802 429 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 164 373 IPR024097 GO:0006355
Lapu8g00802 429 MobiDBLite consensus disorder prediction 164 260 - -
Lapu8g00802 429 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 319 IPR011598 GO:0046983
Lapu8g00802 429 CDD bHLH_AtBPE_like 259 344 - -
Lapu8g00802 429 SMART finulus 275 325 IPR011598 GO:0046983
Lapu8g00802 429 MobiDBLite consensus disorder prediction 207 232 - -
Lapu8g00802 429 Pfam Helix-loop-helix DNA-binding domain 272 320 IPR011598 GO:0046983
Lapu8g00802 429 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 267 337 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00802 Lapu-Chr8 26122114 26126522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00802 1 429 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 43.578 6.43e-85 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu8g00802 HLH 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00802 - - gmx:100801930 789.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g00802 8 26122114 26126522 Lapu8g00802 8 26122114 26126522 ECH