Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00799 ATGGCGGATCCGTACGTTCTCGGCTGGATTCTGTGCTCCGTTCTGAGTCTCTTCGCGCTCTACAGCCTCGCCTTCGGCGGAGAGAGCAGGCATCGCGCTTCACCGAAGCCGGGGAAGAGGATCGAGTTGTCGGAAACCGTGACCACACCCACTAGTGAATGCAGATCGGAGAAACGCGACGGCGACGCTGATGTCGTTATCGTCGGAGCCGGTGTAGCCGGCGCAGCTCTGGCGCACACTCTCGGAAAGGATGGGCGTCGAGTACACGTCATTGAAAGAGATCTGAGTGAGCCAGACCGTATTGTTGGAGAGTTGCTACAACCAGGTGGCTATCTCAAATTGATTGAGCTGGGGCTTGAAGACTGTGTAGACAAAATTGATGCTCAGCAAGTGTTTGGTTATGCCCTTTTCAAGGATGGGAAACATACTCGTCTCTCTTACCCCTTGGAGAAGTTTCACTCAGATGTCTCAGGCAGGAGCTTTCACAATGGTCGCTTTATTCAGAGGATGCGGGAGAAGGCTTCCTCCCTTCCCAATGTGCGATTAGAACAAGGAACAGTCACTTCCCTAGTTGAAGAGAAGGGGACAATTAAAGGTGTGCAATATAAGAACAAAGATGGTCAGGAATTGACAACATTTGCTCCTCTTACTATTGTTTGTGATGGCTGCTTCTCAAACTTACGCCGTTCTCTTTGTAATCCTAAGGTGGATGTTCCCTCATGTTTTGTCGGTTTAGTTTTAGAGAACTGTGAGCTTCCATGTGCGAATCATGGCCACGTTATACTGGGAGACCCCTCACCAATTCTATTCTATCGTATAAGTAGTACAGAGATTCGCTGTCTGGTCGATGTACCTGGTAAGAAGGTTCCTTCTATTTCAAACGGTGAAATGGAAAAGTATTTGAAGACAACAGTAGCTCCACAGATTCCCCCTGAACTTTATGATGGCTTCATAGCTGCTGTGGACAAGGGAAACATAAGGACAATGCCAAACAGAAGCATGCCGGCAGATCCTCATCCTACACCTGGAGCCCTTCTGATGGGAGATGCATTTAACATGCGACATCCACTAACCGGTGGCGGAATGACTGTAGCATTGTCTGATATTGTGGTGCTGAGAAATCTTCTAAGGCCCTTGCCTGACCTGAATGATGCACCCACACTCTGCAAATACCTTGAATCCTTTTATACCTTGCGTAAGCCTGTGGCATCCACCATAAATACATTAGCAGGTGCGCTTTACAAAGTTTTTTGTGCATCACCTGATCAGGCAAGGAAGGAAATGCGCCAAGCTTGCTTTGATTATCTAAGCCTTGGAGGCCTATTCTCCGAAGGACCAGTTTCTTTACTTTCTGGATTAAACCCTCGTCCCTTGAGTTTGGTTCTCCATTTCTTTGCTGTTGCAATATATGGTGTTGGCCGTTTATTGTTACCATTTCCTTCGCCTAAGAGAATATGGATTGGGGCCCGACTAATCTCTGGTGCATCTGGAATAATCTTCCCCATAATTAAGGCTGAAGGGATTCGTCAGATGTTTTTCCCTGCCACTGTTCCAGCTTATTACAGAACTCCCCCGGTTGGACAATAG 1587 0.4757 MADPYVLGWILCSVLSLFALYSLAFGGESRHRASPKPGKRIELSETVTTPTSECRSEKRDGDADVVIVGAGVAGAALAHTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVDKIDAQQVFGYALFKDGKHTRLSYPLEKFHSDVSGRSFHNGRFIQRMREKASSLPNVRLEQGTVTSLVEEKGTIKGVQYKNKDGQELTTFAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCELPCANHGHVILGDPSPILFYRISSTEIRCLVDVPGKKVPSISNGEMEKYLKTTVAPQIPPELYDGFIAAVDKGNIRTMPNRSMPADPHPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLRPLPDLNDAPTLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDQARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRIWIGARLISGASGIIFPIIKAEGIRQMFFPATVPAYYRTPPVGQ* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00799 528 Pfam Squalene epoxidase 213 486 IPR013698 GO:0004506|GO:0016020|GO:0050660
Lapu8g00799 528 SUPERFAMILY FAD/NAD(P)-binding domain 63 437 IPR036188 -
Lapu8g00799 528 MobiDBLite consensus disorder prediction 28 57 - -
Lapu8g00799 528 PANTHER SQUALENE MONOOXYGENASE 13 525 IPR040125 GO:0004506|GO:0016126
Lapu8g00799 528 Gene3D - 56 435 IPR036188 -
Lapu8g00799 528 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 213 228 - -
Lapu8g00799 528 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 64 86 - -
Lapu8g00799 528 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 341 356 - -
Lapu8g00799 528 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 356 372 - -
Lapu8g00799 528 Pfam NAD(P)-binding Rossmann-like domain 67 93 - -
Lapu8g00799 528 FunFam Squalene monooxygenase 2 57 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00799 Lapu-Chr8 26096075 26101546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00799 45 528 Miscellaneous Gene Families AT1G58440 80.698 0.0 819
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00799 K00511 - gmx:100804406 967.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g00799 8 26096075 26101546 Lapu8g00799 8 26096075 26101546 ECH
Lapu8g00799 8 26096075 26101546 Lapu9g02063 9 35410527 35414844 PCT