Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00792 ATGGAGGAATACACTAATAATAATCACTTGAGTGAAAACACAGGTCCAAGTCCAAGTCCAAGGCCTAATTTCTTGTACTCTTCACCTAGTGGTGGAAGCCATAACCATAACCATCAGCAGCATCAGCATCAGCATCATAGCCATCACCACCAGCATCATCAGTTTCCAATCAACACCTTCCATCTTCAATCGGGTGGATCAGATCATTGCTTTCAGTCTGATCAAGTGGCACCACACCCTTCTGTGAAAACTGAAGCCAGCACTTCTCAGCTTCACGCTCCTATTTTTCACTACCCTTTAATGAGAGGAAACCTTCACAACAACAACAGCACCACCACTATGCATCACCATCCCCAGCAACAAGGAGGGAGTCCAACAAGCTCCACTAGCGAAGTTGAAGCCATAAAAGCTAAAATCATTGCTCACCCTCAGTACTCCAATCTTTTGGAAGCTTATATGGATTGCCAAAAGATAGGAGCTTCACCTGAAGTGGTGGCGCGTATGGTTGCTGCAAAGCAAGAGTTTGAAGCACGGCAAAGATCCTCAGGTGGTTCAAGGGATACTTCAAAAGACCCTGAACTCGATCAATTCATGGAAGCATACTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCTATTCAAGAGGCCATGGATTTCATGCGAAGGATAGAAACTCAGCTAAATATGCTATGCAATGGACCCGTCAGGATCTTCTCTGCAGAAGATAAATGTGAAGGGGTTGGTTCATCAGAAGAGGATCAAGATAACAGTGGAGGAGAAACAGAACTTCCTGAGATTGATCCACGAGCAGAAGATCGAGAACTTAAAAACCACTTGCTGAGGAAGTACAGTGGTTACTTGAGTAGCCTTAAGCAAGAACTTTCCAAGAAGAAAAAGAAAGGGAAACTCCCCAAAGATGCTAGGCAAAAGCTACTTAACTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCATTGGCTGAATCAACTGGTTTGGACCAAAAGCAAATAAATAACTGGTTCATAAACCAAAGGAAGAGGCACTGGAAACCATCTGAAGACATGCAATTTATGGTGATGGATGGTCTGCATCCCCAAAGTGCAACTCTCTACATGGATGGTCACTACATGGCTGATGGTATGAGCTTCTCATTAACAAAGAGACTGTGA 1197 0.4369 MEEYTNNNHLSENTGPSPSPRPNFLYSSPSGGSHNHNHQQHQHQHHSHHHQHHQFPINTFHLQSGGSDHCFQSDQVAPHPSVKTEASTSQLHAPIFHYPLMRGNLHNNNSTTTMHHHPQQQGGSPTSSTSEVEAIKAKIIAHPQYSNLLEAYMDCQKIGASPEVVARMVAAKQEFEARQRSSGGSRDTSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRIFSAEDKCEGVGSSEEDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSATLYMDGHYMADGMSFSLTKRL* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00792 398 SMART HOX_1 299 364 IPR001356 GO:0003677
Lapu8g00792 398 MobiDBLite consensus disorder prediction 1 37 - -
Lapu8g00792 398 MobiDBLite consensus disorder prediction 1 84 - -
Lapu8g00792 398 Pfam Homeobox KN domain 317 356 IPR008422 GO:0003677|GO:0006355
Lapu8g00792 398 SUPERFAMILY Homeodomain-like 298 373 IPR009057 -
Lapu8g00792 398 MobiDBLite consensus disorder prediction 38 55 - -
Lapu8g00792 398 ProSiteProfiles ELK domain profile. 277 297 IPR005539 GO:0003677
Lapu8g00792 398 ProSitePatterns 'Homeobox' domain signature. 335 358 IPR017970 GO:0000981|GO:0006355
Lapu8g00792 398 ProSiteProfiles 'Homeobox' domain profile. 297 360 IPR001356 GO:0003677
Lapu8g00792 398 MobiDBLite consensus disorder prediction 56 71 - -
Lapu8g00792 398 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 32 367 - -
Lapu8g00792 398 MobiDBLite consensus disorder prediction 104 129 - -
Lapu8g00792 398 MobiDBLite consensus disorder prediction 179 194 - -
Lapu8g00792 398 Pfam KNOX2 domain 188 234 IPR005541 GO:0003677|GO:0005634
Lapu8g00792 398 CDD homeodomain 309 361 IPR001356 GO:0003677
Lapu8g00792 398 SMART ELK_2 277 298 IPR005539 GO:0003677
Lapu8g00792 398 Pfam KNOX1 domain 134 176 IPR005540 GO:0003677|GO:0005634
Lapu8g00792 398 SMART KNOX2_2 184 235 IPR005541 GO:0003677|GO:0005634
Lapu8g00792 398 MobiDBLite consensus disorder prediction 175 194 - -
Lapu8g00792 398 Pfam ELK domain 277 298 IPR005539 GO:0003677
Lapu8g00792 398 Gene3D - 302 364 - -
Lapu8g00792 398 SMART KNOX1_2 133 177 IPR005540 GO:0003677|GO:0005634
Lapu8g00792 398 MobiDBLite consensus disorder prediction 246 274 - -
Lapu8g00792 398 FunFam Homeobox protein knotted-1-like 2 302 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00792 Lapu-Chr8 26003113 26009231 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00792 67 389 Homeobox Transcription Factor Family AT4G08150 69.486 5.34e-152 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lapu8g00792 KNOX2 2.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00792 - - vum:124822256 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g00792 8 26003113 26009231 Lapu8g00792 8 26003113 26009231 ECH