Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01177 ATGCCTTATAATATATGGTGTGGAGGATGCAATTCAATGATTGCAAAGGGTGTTCGATTCAATGCAGAAAAAAAGCAAGTTGGGAATTATTACTCGACAAAGATATGGAGCTTCACTATGAAGTCTGCTTGCTGCAAACATGAGATCGTCATTCAGACCGATCCTAAGAATTGTGAATATGTCATCATTAGTGGGGCCCAGAAAAAAACTGAAGATTTTGATATTGAGGATGCCGAGACTTTTGAATTACCTGCCGATGAAGAGAGGGGTAAGCTTGCAGATCCATTTTACCGCCTTGAACACCAGGAAGAAGACTTGAAGAAAAAGAAGGAATCTGAACCAGTGCTTGTACGTCTCCAGAGGCAGTCTGATACCAGGCATTCAGATGACTATGCTCTCAATAAGACTCTACGTGCCCGGCTTAGAAGTCAAAAGAAAAGAGTTGCTGAAGAAGAGAATGCTTCCAAGAAAAGAGGCCTTGGCATAAGACTACTACCAGCCACCGAAGAAGATTCTGCCACAGCAAAACGAGTGAAGTTTTCAACTAAATTCGAGAAGAATAGGAAGGACAAGCGGGCACTGATCAATGCCGAATCCATCTTCTCTGGAGTGTCTAGCTATTCTCTGCCTGATAAGAGAAAGCATGAGCTAGAATCAAAAAGAAGAAAAATTTGTGCAACTTCAGCCTCCAGCCTTCTAGCTGGTGGCTTTAAGCCATCATCATGGTCACAGGCTGCTACGCTATCAAGCAAGAAAAAGGGAGCTTCGATGACTTTACCGTTACTACCTCGAACAACACTCTCCAACATCTCCAACGTCCTGGCCGCCGACCTCCACCGTCTCTCCGGAAGCCGTACTTTGCCCCAGGCTCCGCTCACGTCCGGCGCCGCCATGGGCTCCGGGCAGTACTTCGCGGACCTCCGCATCGGATCCCCGCCGCAGCGCCTCCTCCTCGTTGCCGACACCGGGAGCGACCTGGTCTGGGTAAAATGCTCCGCCTGTCGTAACTGCTCCACCAAACGTCCCGGATCCGCATTCCTCCCGCGACATTCCAGAAGCTTCTCCTCCTTCCACTGCTACGACTCGCCGTGTGGATTCGTCCCTCACCCTAGCCCCACACACTGTAACAACCGCACCAAACTCCACACACCATGCCGCTACCAATATTCCTACGCGGATGGGTCCACCACAACGGGCTTCTTCTCCAAGGAAACGACGACGTTCAACACCAGCTCCAACAAACAAGAGAAAATAAAAAACCTGGCCTTCGGTTGCGGGTTTAAAACCTCAGGCCCCAGCGTAACAGGCTCCAGCTTCAACGGTGCGCAGGGCGTAATGGGACTGGGCCGCGGGCCCATTTCGTTTACCTCCCAACTCGGCCGCAAATTCGGGAACACCTTCTCTTACTGTCTACTCGACTACACCCTATCCCCACCACCCAAAAGCTACCTCACCATCGGCGCCTCCTCAAACGACGTCGTTTCCAGGAAGCTCTTTAGTTACACGCCCTTTCTCACTAACCCTCTCTCTCCCTCGTTTTATTACATCACCATTCAGAGTGTCTTCGTTGACGGCGTTAGGCTACCGATAAACCCTTCCGTTTGGCGCATCGACAACAACGGAAACGGCGGCACCGTCGTGGACTCCGGCACCACCCTGTCTTTTCTAGCGGAGCCAGCTTATAAGCAGGTTTTGGCCGCGTTCCGTCGGCGCGTGAGGCTTCCGGCAGCGGAGGAAGCCGCCGCGCTCGGGTTCGACCTTTGTGTTAACGTCTCCGGCGTGGCCAGGCCGAGGCTACCTAAGCTGAGATTCGTTCTCGCCGGAAAAGTGGAGCTGTCGCCGCCCGCGAGGAATTACTTTATTGAGCCGGTGGAGGGTGTAAAGTGTCTGGCGGTTCAGCCGGTTCAACCGGGTTCTGGTTTTTCTGTGATTGGGAATTTGATGCAGCAAGGATACTTGTTTGAATTCGATTTGGACCGGTCTCGGATCGGGTTCTCTCGTCACGGATGCGCGGTTCGCTAA 2022 0.5203 MPYNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSACCKHEIVIQTDPKNCEYVIISGAQKKTEDFDIEDAETFELPADEERGKLADPFYRLEHQEEDLKKKKESEPVLVRLQRQSDTRHSDDYALNKTLRARLRSQKKRVAEEENASKKRGLGIRLLPATEEDSATAKRVKFSTKFEKNRKDKRALINAESIFSGVSSYSLPDKRKHELESKRRKICATSASSLLAGGFKPSSWSQAATLSSKKKGASMTLPLLPRTTLSNISNVLAADLHRLSGSRTLPQAPLTSGAAMGSGQYFADLRIGSPPQRLLLVADTGSDLVWVKCSACRNCSTKRPGSAFLPRHSRSFSSFHCYDSPCGFVPHPSPTHCNNRTKLHTPCRYQYSYADGSTTTGFFSKETTTFNTSSNKQEKIKNLAFGCGFKTSGPSVTGSSFNGAQGVMGLGRGPISFTSQLGRKFGNTFSYCLLDYTLSPPPKSYLTIGASSNDVVSRKLFSYTPFLTNPLSPSFYYITIQSVFVDGVRLPINPSVWRIDNNGNGGTVVDSGTTLSFLAEPAYKQVLAAFRRRVRLPAAEEAAALGFDLCVNVSGVARPRLPKLRFVLAGKVELSPPARNYFIEPVEGVKCLAVQPVQPGSGFSVIGNLMQQGYLFEFDLDRSRIGFSRHGCAVR* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01177 673 Pfam Xylanase inhibitor N-terminal 303 487 IPR032861 -
Lapu2g01177 673 SUPERFAMILY Acid proteases 297 670 IPR021109 -
Lapu2g01177 673 ProSiteProfiles Peptidase family A1 domain profile. 303 666 IPR033121 -
Lapu2g01177 673 Gene3D Acid Proteases 282 487 IPR021109 -
Lapu2g01177 673 CDD pepsin_A_like_plant 302 670 IPR034161 -
Lapu2g01177 673 Gene3D Acid Proteases 488 672 IPR021109 -
Lapu2g01177 673 Pfam Saf4/Yju2 protein 1 224 IPR007590 GO:0000398
Lapu2g01177 673 PANTHER OS07G0603500 PROTEIN-RELATED 286 670 - -
Lapu2g01177 673 PRINTS Pepsin (A1) aspartic protease family signature 642 657 IPR001461 GO:0004190|GO:0006508
Lapu2g01177 673 PRINTS Pepsin (A1) aspartic protease family signature 309 329 IPR001461 GO:0004190|GO:0006508
Lapu2g01177 673 PRINTS Pepsin (A1) aspartic protease family signature 545 556 IPR001461 GO:0004190|GO:0006508
Lapu2g01177 673 FunFam Aspartyl protease family protein 495 672 - -
Lapu2g01177 673 Coils Coil 134 154 - -
Lapu2g01177 673 FunFam Aspartyl protease family protein 2 284 487 - -
Lapu2g01177 673 Pfam Xylanase inhibitor C-terminal 514 666 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01177 Lapu-Chr2 20748628 20784178 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01177 280 670 Miscellaneous Gene Families AT1G77480 25.123 1.13e-22 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01177 K22683 - gmx:100812865 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01177 2 20748628 20784178 Lapu2g01177 2 20748628 20784178 ECH