Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0542 ATGTCACTGTCCACTTTTCAGTTGGAGTCCCTTTTTGTAAGAGTAGCCATGGGAAGAGCTCCTTGTTGTGACAAAGAAAATGTTAAGAGAGGGCCATGGTCTCCAGAAGAAGATGCAACACTTAGGAGTTATATAGAGACTCATGGCACTGGTGGAAATTGGATTGCATTGCCAAGAAAAGCTGACCTTAGACGATGTGGCAAGAGTTGCCGTCTAAGGTGGCTCAATTATCTTAGGCCAGACATCAAACATGGCGGTTTTACTGAAGAGGAGGACAACATCATTTGCACCCTCTATAGTCAAATGGGAAGCAGATGGTCTGCTATAGCCTCTAAACTTAATGGGAGAACAGACAATGATGTGAAAAACTACTGGAACACAAAACTAAAGAAGAAGCTTATGGCAGGAAAAGTCTGCATCAAAACATTGACTGATAATAACACTCTTACTTCAACTCCATTATTAACTCAAAATTCAGACTTCCATGCTTCACAGAAACAAAATTCTATACCAAACTTAAGCACTGATGCTTGTTCTGAATTCAACATTAGTGGAAAAAACATGAGTTTTGGCCTAATTAATCAGCTATTTAATCCAGAAGTTGGCTCAAGTTCAAGGAATAATAATAATAACCCCTTGATGTCATTGTCTCAAGAAGGTTCAAGCATTTCAGGTTCATCTTCAATTGCATTGGACAACAAGTGTGTATTGCTGCCAGAACATTCTAGTGATCATGAATCTACAGAAATGTTGATAGATTTTGGGTTTGAATTTCCTTGTGATCTTATCAATGGTCTTGATTGTAATGAGAGTGAATTTTCTCTAAGTGGATATCCTGAATGGGTTGATTTTAGCTTTGTTGACATTAAGCCATAA 876 0.3813 MSLSTFQLESLFVRVAMGRAPCCDKENVKRGPWSPEEDATLRSYIETHGTGGNWIALPRKADLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIICTLYSQMGSRWSAIASKLNGRTDNDVKNYWNTKLKKKLMAGKVCIKTLTDNNTLTSTPLLTQNSDFHASQKQNSIPNLSTDACSEFNISGKNMSFGLINQLFNPEVGSSSRNNNNNPLMSLSQEGSSISGSSSIALDNKCVLLPEHSSDHESTEMLIDFGFEFPCDLINGLDCNESEFSLSGYPEWVDFSFVDIKP* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0542 291 Pfam Myb-like DNA-binding domain 30 78 IPR001005 -
Lan3g0542 291 Pfam Myb-like DNA-binding domain 85 127 IPR001005 -
Lan3g0542 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 133 IPR017930 -
Lan3g0542 291 CDD SANT 87 129 IPR001005 -
Lan3g0542 291 ProSiteProfiles Myb-like domain profile. 25 78 IPR001005 -
Lan3g0542 291 PANTHER OS09G0431300 PROTEIN 17 205 - -
Lan3g0542 291 Gene3D - 22 84 - -
Lan3g0542 291 SUPERFAMILY Homeodomain-like 27 125 IPR009057 -
Lan3g0542 291 CDD SANT 32 78 IPR001005 -
Lan3g0542 291 Gene3D - 86 167 - -
Lan3g0542 291 ProSiteProfiles Myb-like domain profile. 79 129 IPR001005 -
Lan3g0542 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 78 IPR017930 -
Lan3g0542 291 SMART sant 29 80 IPR001005 -
Lan3g0542 291 SMART sant 83 131 IPR001005 -
Lan3g0542 291 PANTHER OS09G0431300 PROTEIN 17 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0542 Lan-Chr3 5597737 5599597 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0542 3 135 MYB Transcription Factor Family AT2G36890 74.436 2.31e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan3g0542 Myb_DNA-binding 8.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0542 K09422 - gmx:100817747 364.77