Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0541 ATGAAGAGGTTCACTGCCTGCTGCTTCACAAACAAAATCTCCAAGTTTCTTTCTCACAAGAAGCACAAGCAATCTCAGCCTCAGATCATAGCGGGAAATATCTCTGGTTCAAGTAAGAGCATGGCTACTAATGTTTTACTTAATCACGACTTCTCTGGAGGGCTGGACTCTTGGCGTCTCAATTGCTGCAATGGCTATGTAATTTCAGCTGAAGCAGGTTCTCACAAAGGAGTTTCAATGGGGTCAGATAGTAATTATGCTGTTATCACCGATCGAAAGGAATGCTGGCAAGGTCTCGAGCAAGATATTACAGACAGAATTTCCATTGGTTCTACTTACACGGTTTCAGCTTCAGTTGGAGTATCTGGTCTGTCTCAGGGATCTGCTGATGTTATTGCTACTGTGAAACTAGAATATCATGATAAACCCACTAGTTACTTGTTCATCGGAAGAACATCTGTTGTAAAGGATAGCTGGGAAAAGTTGGAAGGGACATTTTCTTTGTCAACTGTGGCTGATCGGGTTATATTTTATTTGGAAGGACCTGCTTCTGGAGTTGACCTTCTTATACGATTAGTAGAGATCCACTCTTCCAGTTCAAATGATAATGCCACAAGCACAGGATGTGTTTCCACTGGAGATGACAACATCATAATAAATCCACAATTTGAGGATGGCCTGAATAATTGGTCTGGAAGAGGCTGCAAGATTATGTTGCATGACTCCATGGGAGATGGGAAAATTCTCCCTCAGTCTGGGAAAAGCTTTGCATCTGCAACAGAACGCACACAAAGCTGGAATGGGATTCAGCAAGAGATCACTGCACGAGTGCAGCGCAAGCTTGCCTATGAGGTCACTGCTTTAGTTCGAATATTTGGCAACAATGTTACTACTTCTGATGTCCGAGCTACTTTGTGGGTCCAAACACCAGATCTTCGAGAGCAGTATATAGGCATTGCTAATGTGCAGGTAACAGATAAAGATTGGGTCAATATGCAGGGAAAATTCCTTCTAAATGGTTCCCCATCAAAAGTAGTAATTTATTTAGAAGGCCCCCCTCCAGGCACTGACATTCTTGTCAATACTTTGTCTATAAAGCATGCAGCTAAAGCACCTCCTTCAATCCCACCAGATGTAAAGAATGTTGCTTTTGGGGTTAACGTAATTGAGAACAGCAGTCTGGCTGATGGCAATAATGGATGGTTTCCCCTTGGTAATTGCACTTTAAGTGTTAGAACTGGTTCACCACATATAATTCCACCTCTGGCAAGAGATTCTCTCGGGCCTCATGAACTCCTAAGCGGGCGCTACATCCTTGTAACCAATCGCACACAAACATGGAATGGTCCTGCTCAGACAATCACTGAAAAACTGAAGCTCTTTTTGACTTATCAAGTGTCTGCTTGGGTCCGGATTGGTTCAGGATCAAATGGGCCACAGAATGTGAATGTAGCCCTTAGTGTTGACAACCAGTGGGTCAATGGAGGACAAACTGAGGTTTCTGATGACAGGTGGCATGAAATTGGTGGGTCCTTTAGAATTGAAAAGCAGCCATCAAATGTTATGGTTTATGTCCAAGGCCCTGCTGCTGGTGTAGATTTGATGGTTGCCGGACTTCAAATTTTTCCTGTTGATAGACATGCAAGGTTTAGATATTTAAAGATGCAGACAGACAAGATCCGCAAGCGTGATGTTATCCTGAAATTCCCTGGGCTGGACTCTAGCAGCTACCCCAAAACCTCGGTGCAAGTTAGACAAATACGAAACGATTTCCCAATTGGAACATGTATCAGTAGAACAAATATTGACAATGAAGATTTCGTTAACTTTGTGGTGAAACATTTTAACTGGGCTGTGTTTGGCAATGAGTTGAAGTGGTATTGGACTGAGCCACAACAAGGGAGTTTCAATTACAGGGATGCTGATGATCTGTTAACCTTGTGTCAGAAAAACAGCATACAAACTCGGGGTCATTGTATCTTTTGGGATGTGGATGATACTGTCCAGCAATGGATTAAGTCACTAAACAAAAATGATTTGATGACAGCTGTCCAGAATCGCTTAACTGGCCTGCTGACTCGCTACAAGGGCAAGTTCAATCACTATGATGTCAACAATGAAATGCTACATGGTTCATTTTACCCGGATAGACTCGGCAAGGATATCAGGGCCAACATGTTCAAAACTGCAAACCAACTAGACCCATCAGCTACTCTTTTTGTGAATGATTATCATGTTGAAGATGGATGTGACACCAGATCATGTCCAGAAAAATACATTCAACATATTCTCGATTTGCAAGAGCAAGGTGCACCCGTTGGGGGAATCGGAATTCAAGGCCACATAGACACTCCAGTGGGGCCTATAGTTTGTTCTTCCCTTGATAAACTGGGTATTCTTGGTCTACCTATCTGGTTTACGGAGCTTGACGTATCTGCCATTAACGAATATATCAGAGCAGATGATCTGGAAGTTATGCTAAGGGAAGCTTTGGCTCACCCTGCAGTTGAAGGTATAATGCTGTGGGGTTTTTGGGAGTTGTTTATGAGCAGGGACAATGCACACTTGGTGAATGCAGAAGGTGATATCAATGAAGCTGGGAATAGATTCCTAGCTCTTAAACAAGAGTGGTTGTCTCACAGACATGGTAATGTTGATGAGCAAGGTCAATTCAACTTCAGAGGCTTTCATGGAACATACAATGTCCAAGTTGTGACTGATACAAAGAAAATTTCTAAGACATTTGTTCTTGACAAGGGTGATTCTCCACTGGTGATATCCATTGATATATAA 2793 0.4253 MKRFTACCFTNKISKFLSHKKHKQSQPQIIAGNISGSSKSMATNVLLNHDFSGGLDSWRLNCCNGYVISAEAGSHKGVSMGSDSNYAVITDRKECWQGLEQDITDRISIGSTYTVSASVGVSGLSQGSADVIATVKLEYHDKPTSYLFIGRTSVVKDSWEKLEGTFSLSTVADRVIFYLEGPASGVDLLIRLVEIHSSSSNDNATSTGCVSTGDDNIIINPQFEDGLNNWSGRGCKIMLHDSMGDGKILPQSGKSFASATERTQSWNGIQQEITARVQRKLAYEVTALVRIFGNNVTTSDVRATLWVQTPDLREQYIGIANVQVTDKDWVNMQGKFLLNGSPSKVVIYLEGPPPGTDILVNTLSIKHAAKAPPSIPPDVKNVAFGVNVIENSSLADGNNGWFPLGNCTLSVRTGSPHIIPPLARDSLGPHELLSGRYILVTNRTQTWNGPAQTITEKLKLFLTYQVSAWVRIGSGSNGPQNVNVALSVDNQWVNGGQTEVSDDRWHEIGGSFRIEKQPSNVMVYVQGPAAGVDLMVAGLQIFPVDRHARFRYLKMQTDKIRKRDVILKFPGLDSSSYPKTSVQVRQIRNDFPIGTCISRTNIDNEDFVNFVVKHFNWAVFGNELKWYWTEPQQGSFNYRDADDLLTLCQKNSIQTRGHCIFWDVDDTVQQWIKSLNKNDLMTAVQNRLTGLLTRYKGKFNHYDVNNEMLHGSFYPDRLGKDIRANMFKTANQLDPSATLFVNDYHVEDGCDTRSCPEKYIQHILDLQEQGAPVGGIGIQGHIDTPVGPIVCSSLDKLGILGLPIWFTELDVSAINEYIRADDLEVMLREALAHPAVEGIMLWGFWELFMSRDNAHLVNAEGDINEAGNRFLALKQEWLSHRHGNVDEQGQFNFRGFHGTYNVQVVTDTKKISKTFVLDKGDSPLVISIDI* 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0541 930 SMART glyco_10 624 874 IPR001000 GO:0004553|GO:0005975
Lan3g0541 930 Pfam Carbohydrate binding domain 215 352 IPR003305 GO:0016798
Lan3g0541 930 Pfam Carbohydrate binding domain 44 184 IPR003305 GO:0016798
Lan3g0541 930 Pfam Carbohydrate binding domain 387 529 IPR003305 GO:0016798
Lan3g0541 930 SUPERFAMILY Galactose-binding domain-like 43 196 IPR008979 -
Lan3g0541 930 SUPERFAMILY (Trans)glycosidases 578 881 IPR017853 -
Lan3g0541 930 Gene3D Glycosidases 578 884 - -
Lan3g0541 930 SUPERFAMILY Galactose-binding domain-like 214 368 IPR008979 -
Lan3g0541 930 SUPERFAMILY Galactose-binding domain-like 385 545 IPR008979 -
Lan3g0541 930 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 42 202 - -
Lan3g0541 930 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 205 930 - -
Lan3g0541 930 Gene3D - 210 368 - -
Lan3g0541 930 Gene3D - 383 542 - -
Lan3g0541 930 Gene3D - 38 197 - -
Lan3g0541 930 Coils Coil 856 876 - -
Lan3g0541 930 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 578 873 IPR001000 GO:0004553|GO:0005975
Lan3g0541 930 PANTHER GLYCOSYL HYDROLASE 205 930 IPR044846 GO:0004553|GO:0005975
Lan3g0541 930 PANTHER GLYCOSYL HYDROLASE 42 202 IPR044846 GO:0004553|GO:0005975
Lan3g0541 930 Pfam Glycosyl hydrolase family 10 587 844 IPR001000 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0541 Lan-Chr3 5588503 5593335 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0541 1 930 Glycoside Hydrolase AT1G58370 66.808 0.0 1330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0541 - - lja:Lj0g3v0316669.1 1640.94