LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan3g0540	ATGGAGGAATACACTAATAACAATCACTTGAGTGAAAACACAGATTCAAGTCCAAGGCCAAATTTCTTGTACTCTTCTTTGGCTAGTGGTTCAGGTGTTGGAAACCATCATCATAATCATGATCATCACGAGTTTCCCATCAACACCTTTCATCTTCAATCAGATGGTGGATCATATCATCCTCATCACTGTTTTCAATCCAATCAAGTACCACCACACTGTGTTGTGAAAACTGAAGCTCCTTTAATGAGAGGAAATCTTCACAACAACTTGATGCAGCAACACCAAGGTGGGAGCCAAATTAGCTCCAATGAAGTTGAAGTTATAAAGGCCAAAATCATTGCTCATCCTCAATACTCAAATCTCTTAGAAGCTTACATGGATTGTCAAAAGGTTGGAGCTCCGGCGGAAGTGGTGGCGCGTCTGGTGGCGGTGAGGCAAGAGTTTGAGGCACGGCAGCGATCTTCAGTTAACTCAAGGGAAACTTCAAAGGACCCAGAACTTGACCAATTTATGGAAGCTTATTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCTGTGCAAGAAGCCATGGATTTCATGAGAAGAATAGAAACTCAGCTAAATATGCTTTGCAATGAACCTGTGCGGATTTTCTCTGATAAATATGAAGGTGTTGGGTCATCAGAAGAAGAACAAGACAATAATAGTGGTGGAGAAACAGAACTTCCTGGTATTGATCCTCAATCAGAAGATCGTGAACTTAAAAACCACTTGCTGAAAAAGTATAGTGGTTACTTAGGTAGCCTTAAGCAAGAACTTTCAAAGAAAAAGAAGAAGGGAAAGCTTCCTAAAGATGCTAGGCAGAAGCTACTAAATTGGTGGGAACTACACTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCATTGGCAGAGTCAACTGGTTTGGACCAGAAGCAAATAAATAACTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCATCTGAAGATATGCAATTTATGGTGATGGATGGCCTGCACCCTCAGAATGCAGCAACTCTTTATATGGATGGTCCTTATATGTCTGATGGTCACTATCGCCTAGGGCCATGA	1110	0.4144	MEEYTNNNHLSENTDSSPRPNFLYSSLASGSGVGNHHHNHDHHEFPINTFHLQSDGGSYHPHHCFQSNQVPPHCVVKTEAPLMRGNLHNNLMQQHQGGSQISSNEVEVIKAKIIAHPQYSNLLEAYMDCQKVGAPAEVVARLVAVRQEFEARQRSSVNSRETSKDPELDQFMEAYYDMLVKYREELTRPVQEAMDFMRRIETQLNMLCNEPVRIFSDKYEGVGSSEEEQDNNSGGETELPGIDPQSEDRELKNHLLKKYSGYLGSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNAATLYMDGPYMSDGHYRLGP*	370

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan3g0540	369	SUPERFAMILY	Homeodomain-like	271	345	IPR009057	-
	Lan3g0540	369	Pfam	ELK domain	250	271	IPR005539	GO:0003677
	Lan3g0540	369	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	1	361	-	-
	Lan3g0540	369	MobiDBLite	consensus disorder prediction	1	42	-	-
	Lan3g0540	369	PANTHER	HOMEOBOX PROTEIN KNOTTED-1-LIKE 1	1	361	-	-
	Lan3g0540	369	Gene3D	-	275	337	-	-
	Lan3g0540	369	Pfam	KNOX2 domain	162	208	IPR005541	GO:0003677\|GO:0005634
	Lan3g0540	369	MobiDBLite	consensus disorder prediction	1	33	-	-
	Lan3g0540	369	SMART	HOX_1	272	337	IPR001356	GO:0003677
	Lan3g0540	369	ProSiteProfiles	'Homeobox' domain profile.	270	333	IPR001356	GO:0003677
	Lan3g0540	369	ProSitePatterns	'Homeobox' domain signature.	308	331	IPR017970	GO:0000981\|GO:0006355
	Lan3g0540	369	MobiDBLite	consensus disorder prediction	221	246	-	-
	Lan3g0540	369	SMART	KNOX1_2	107	151	IPR005540	GO:0003677\|GO:0005634
	Lan3g0540	369	SMART	KNOX2_2	158	209	IPR005541	GO:0003677\|GO:0005634
	Lan3g0540	369	Pfam	Homeobox KN domain	290	329	IPR008422	GO:0003677\|GO:0006355
	Lan3g0540	369	ProSiteProfiles	ELK domain profile.	250	270	IPR005539	GO:0003677
	Lan3g0540	369	SMART	ELK_2	250	271	IPR005539	GO:0003677
	Lan3g0540	369	Pfam	KNOX1 domain	109	150	IPR005540	GO:0003677\|GO:0005634
	Lan3g0540	369	CDD	homeodomain	282	334	IPR001356	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan3g0540	Lan-Chr3	5518740	5523601	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan3g0540	64	369	Homeobox Transcription Factor Family	AT4G08150	69.782	9.78e-147	419

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Lan3g0540		KNOX2	2.6e-25	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan3g0540	-		-	gmx:100807602	577.015