Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0538 ATGGGAAGAGCTCCTTGCTGTGACAAATCAAACGTGAAGAAAGGGCCTTGGTCTCCAGAAGAAGATTCCAAACTCAAGTTCTACATAGAAAAACATGGCACTGGAAGTAACTGGTTAACTTTGCCTCAAAAGATAGGCTTGAAACGTTGTGGTAAGAGTTGCCGTCTAAGGTGGTTAAACTATCTTCGCCCTAATCTCAGACATGGTGGTTTCTCTGAAGAAGAAGACAACATTATTTGCAGCCTTTACATTAGTATTGGAAGCAGGTGGTCGGTCATTGCAGCTCAATTGCCCGGAAGAACTGACAATGATATAAAGAACTACTGGAACACTAGGCTAAAGAAGAAGCTTCTATGGAAGCACCGCAAAGAACAACAACAAGCACTTAGTAATGGAGGTAACAATAGGGCTGTTAAGAAAGAAAGCAATAGAGAGAGTAGAAGTGATTCCTTATCCTTTGTACCAGAAAATAGTACTCATCATGAACAACTATATAATTGGCAACAAATGCCTATGCTACCTCTACAACCATTGCCATACACAAACCAAAGCCCTAGTTTCAACAATGAAGATTCTATTAAAAAGTTTCTTAGGAGATTTTATGATGATAACTATCATCCTACTCTTGATGGGTTATTGAATCATCATGAATTCTCAAATGGTATTTATAAAGAACAAGTTCATATGGTCTCTTCTTCAGCTTGCATTAGCAATAGCAATATCAACAACAACGAAGTGCAATATTCACAGACCGGTCAATATGGATTTGATTTGGTGCAAGGACAAGGAAGTACTTTCACCTCATCAATTGAGGAAGTGGTATCTACTAATACAAATAATTATCCACAAAGATTAGATGGGTTGGAGTTTTTCTATGGAGAGGATATAATCAACAATAAGATAATGGGTTCTTCTAGTACTAGTTGTAGCCAGAGTAGTAATTGGGGTGAGACTAATACTCAAATTTATCATCATCATCCTCTTGTTTCTTCAAATTACCAAGTTCAAGGTTTGATCCAAGAGACTCACAACAATGTGTTTTTGCAAAAGTTTAGCTACCGGGAAATGCAATAA 1074 0.3743 MGRAPCCDKSNVKKGPWSPEEDSKLKFYIEKHGTGSNWLTLPQKIGLKRCGKSCRLRWLNYLRPNLRHGGFSEEEDNIICSLYISIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLWKHRKEQQQALSNGGNNRAVKKESNRESRSDSLSFVPENSTHHEQLYNWQQMPMLPLQPLPYTNQSPSFNNEDSIKKFLRRFYDDNYHPTLDGLLNHHEFSNGIYKEQVHMVSSSACISNSNINNNEVQYSQTGQYGFDLVQGQGSTFTSSIEEVVSTNTNNYPQRLDGLEFFYGEDIINNKIMGSSSTSCSQSSNWGETNTQIYHHHPLVSSNYQVQGLIQETHNNVFLQKFSYREMQ* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0538 357 CDD SANT 71 113 IPR001005 -
Lan3g0538 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lan3g0538 357 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lan3g0538 357 Gene3D - 70 149 - -
Lan3g0538 357 Gene3D - 6 68 - -
Lan3g0538 357 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lan3g0538 357 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lan3g0538 357 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lan3g0538 357 PANTHER OS09G0431300 PROTEIN 1 341 - -
Lan3g0538 357 CDD SANT 16 62 IPR001005 -
Lan3g0538 357 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lan3g0538 357 MobiDBLite consensus disorder prediction 124 156 - -
Lan3g0538 357 PANTHER TRANSCRIPTION FACTOR MYB36-LIKE 1 341 - -
Lan3g0538 357 SMART sant 13 64 IPR001005 -
Lan3g0538 357 SMART sant 67 115 IPR001005 -
Lan3g0538 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0538 Lan-Chr3 5491982 5493797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0538 1 197 MYB Transcription Factor Family AT3G49690 60.406 1.56e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan3g0538 Myb_DNA-binding 6.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0538 K09422 - gmx:100800290 423.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1804 6 29382614 29386169 Lan3g0538 3 5491982 5493797 LSH
Lan3g0538 3 5491982 5493797 Lan3g1162 3 23877615 23879627 PCT
Lan3g1162 3 23877615 23879627 Lan3g0538 3 5491982 5493797 PCT