Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0535 ATGGGTTTTGAACATGGAAATAAGAGCATTCTGAAATGTCCTGAATCATCTGGTTTGAGCACAAATGTTTCAGAAATGGGTATTAGTTCTGTCTCCATGGATAAGCCTCATACCCCTTCAGATCATGTAACTAATCCTTATCTTCCTTCTAATGCTTGGGATCCACTTGTTTCACTGAGTCAGGCTCAAACTTTTGGAGGCTCTTCAATGGTTTCTCATAGTGACTTTGGCAGAAACTCATCTTACCCTCTTGTTTTGGAAGATCAAGGAATGAGTAGCACCTCTCACATTGTTCAATATATGTCTGAGTCAAATCTTGGGGACATGGTTTCCAAGGTTCCTTCCTATGGTAGTGGAAACTTCTCAGAAATTGTTGGCACTTTTGGTCAACCTGGGTTTGGTGACATAGCTAACACTAACACTGGGTATAGACCAGATTATAATGTGATTAAGGATGCTGGAAATGAAATGGTTCCAATAATTGGTGAAGAATATCAGCTTGAGGATTCAGCTACTGAAGAGGGAGCAACAGGATCTGGACCTAGTGGAAATAGAAGAAAGAGAAGTATTGATCATAATTCTTCTTTCAGTCCAAATAAGAATGCTAATGGTGATGTGCTGAAAGATTCCCCTGGGAAGAGCTATGATGGTGCAAAAGAACATGAAAAGAAACAAAAAGTTGAGCAGAATAGTAGTGCAGATTTGCACCATAAGCAACCGGTGAAGCAAGCTAAAGAGAATTCTCTAAGTGGAGAAGCTACTAAAGACAATTTCATTCATGTGAGAGCTCGAAGAGGTCAAGCTACAAACAGCCATAGCCTTGCAGAAAGGGTGAGAAGAGAAAAAATTAGCGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGGTGCAACAAGATAACTGGAAAAGCAGTAATGCTGGATGAGATTATAAACTACGTGCAATCGCTGCAGCAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACAGTGAATCCAGAACTGAATTTTGATGTAGAGCAGATCCTATCCAAGGATATTCTGCAGTCGCGCATAGGAGGACATGGAATTGGTGGATATGGTCCTAGTCTAAGCTCTTCTCACCCATTTCCCAATGCAAGTTTCCATGGAACCATGAATGGCATGCCTAGTACATCAACACAATTCCATCCTTTGCCTCAGTCTCTTTCGGATCATGAGTTCCAAAGCTTCTACGGAATGCGATATGATTCCAGTACAACACATGATAATTTGGGACCCGATGGAAGGTTGAAAACAGAGTTATAG 1287 0.4118 MGFEHGNKSILKCPESSGLSTNVSEMGISSVSMDKPHTPSDHVTNPYLPSNAWDPLVSLSQAQTFGGSSMVSHSDFGRNSSYPLVLEDQGMSSTSHIVQYMSESNLGDMVSKVPSYGSGNFSEIVGTFGQPGFGDIANTNTGYRPDYNVIKDAGNEMVPIIGEEYQLEDSATEEGATGSGPSGNRRKRSIDHNSSFSPNKNANGDVLKDSPGKSYDGAKEHEKKQKVEQNSSADLHHKQPVKQAKENSLSGEATKDNFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVEQILSKDILQSRIGGHGIGGYGPSLSSSHPFPNASFHGTMNGMPSTSTQFHPLPQSLSDHEFQSFYGMRYDSSTTHDNLGPDGRLKTEL* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0535 428 Gene3D - 264 339 IPR036638 GO:0046983
Lan3g0535 428 CDD bHLH_AtBPE_like 257 342 - -
Lan3g0535 428 MobiDBLite consensus disorder prediction 165 253 - -
Lan3g0535 428 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 265 335 IPR036638 GO:0046983
Lan3g0535 428 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 267 317 IPR011598 GO:0046983
Lan3g0535 428 MobiDBLite consensus disorder prediction 212 243 - -
Lan3g0535 428 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 7 428 IPR024097 GO:0006355
Lan3g0535 428 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 7 428 - -
Lan3g0535 428 Pfam Helix-loop-helix DNA-binding domain 270 318 IPR011598 GO:0046983
Lan3g0535 428 SMART finulus 273 323 IPR011598 GO:0046983
Lan3g0535 428 Coils Coil 423 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0535 Lan-Chr3 5434087 5437503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0535 1 428 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 40.972 6.88e-74 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan3g0535 HLH 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0535 - - gmx:100794464 596.66