Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0533 ATGAGGACTATGAATGATATTAATAGCAACAATGGTGATGGTAGTAATCATAACTGGTTGGGATTCTCTCTCATGAAAATGGAGAATAATCATCATGATGATGATGATCAAGTTCAAGATCATCATCACTATTATCATAACTCTCAGCAAGATTCTACTGTTTCCAACACTAGTGTTCCTACAAACTTCTACTGGGAAAACAGTGATTTTCATTCTCTTCCTTTGTCTATGATGCCTCTCAAATCTGATGGGTCACTTTGCATTTTGGAAGCTCACACCAGATCACAAACACAAGACTTCCTAGGTGGTGCAACTATGGGAAATGACCAATATGGAGGTTCTGAAAGAGAAGCAATGGCTCTAAGTCTAAACAGCATTTACTATAACCAAAATCCTCATGAGTCTCAAACAAGTAGAGACCTTCTTTCTGACCCTTTCAGGCAACAACACCCATACTATTCAGGATTTGCTTGCAATGGGATTTACCAACCACCAATGATGGAACAAGAAACAAAGCAAACCCATGTCACAGTTTGCAGCAGCTCACAAATACCTCAGGTTGGAGATGAAGGCATTGCTTGCTTCAAAAGCTGGGAGAATCAATTGAATAATAATAATACTAGCATTGGAGATGATGTTGGTGCTTCAGGTTCAGGGTCTGGTGGTGTTAGTAGTGTACAACATTGTGGAAATTTACAGGCTCTAAGCCTTTCTATGAGTCCTGGTTCTCAATCAAGTTGTGTCACTATTCCTTCTGTTACTACTACTAACTCAGTGGCCATTGAAACCAAAAAAAGAGGGTCTGCAAAGCTTGGCCAAAAGCAACCAGTGCATAGGAAATCTATTGATACATTTGGGCAGAGAACTTCACAGTATAGAGGTGTCACAAGGCATAGATGGACTGGTAGATATGAAGCACATTTGTGGGATAATAGTTGCAAGAAAGAAGGGCAAACCAGGAAAGGAAGACAAGTTTATTTAGGTGGTTATGATATGGAAGAGAAAGCGGCAAGAGCTTATGATCTTGCAGCTCTTAAGTATTGGGGATCTTCAACACATATAAACTTCCCGGTAGAAAATTATCGAATGCAACTTGAAGAAATGAAAAATATGAGTAGACAAGAATTTGTTGCTCACTTGAGAAGAAAGAGCAGTGGTTTTTCTAGGGGTGCTTCAATCTATAGAGGGGTTACAAGGCACCATCAACATGGAAGATGGCAAGCAAGGATAGGTAGAGTTGCAGGGAATAAGGACCTTTATCTTGGGACATTTAGTTCACAAGAGGAAGCAGCTGAAGCATATGATGTAGCCGCAATCAAATTCCGCGGTGTAAATGCAGTGACTAACTTCGACATATCTAGATACCACGTTGAAAAAATCATCGCCAGTAATACACTACTTGCTGGAGAGCAAGCAAGGAGAAACAACAAAGAGAGTGAACCAAGAACAAAGGCAATTGAGTATAATGTTGTACCAAGCCAAATCAATAACAAAGAAGTTGAAGCCGAAAACAATAACAACAACAACAATGATACTAATGTTTCAGATTGGAAAATGGCATTATATCATGAATCACCACAACAGCAACAACAATCAAATTCAAATAGCTGTGGCCAAAAAGCTATGAACTGTGGAAATTATAGAAACCATGCTTTCTCTATGTCCCTACAAGATCTCATAGGGATTGATTCATTAGGATCTAGCCACCAAACTACAATGCTAGATCATGACTCTACTACTAAACTAGGGACACATTTTTCAGACCAGTCCTCTCTTGTGGCCAATTTAAGCAGCACAAGAGAATGCAGTTCTGATAAAACATGTCCTACAATGTTCTTTCCAAAGCCTCCAATAGGGTCAACAAAGATTGTTAGCCCTATTGCTACTACTGGTGTAAGCTCTTGGTTTCCCTCACCAGCTATCTCAATGTCTCAGTTGCCAGTTTTTGCTGCTTGGAATGATGCCTAG 1968 0.3968 MRTMNDINSNNGDGSNHNWLGFSLMKMENNHHDDDDQVQDHHHYYHNSQQDSTVSNTSVPTNFYWENSDFHSLPLSMMPLKSDGSLCILEAHTRSQTQDFLGGATMGNDQYGGSEREAMALSLNSIYYNQNPHESQTSRDLLSDPFRQQHPYYSGFACNGIYQPPMMEQETKQTHVTVCSSSQIPQVGDEGIACFKSWENQLNNNNTSIGDDVGASGSGSGGVSSVQHCGNLQALSLSMSPGSQSSCVTIPSVTTTNSVAIETKKRGSAKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGSSTHINFPVENYRMQLEEMKNMSRQEFVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSSQEEAAEAYDVAAIKFRGVNAVTNFDISRYHVEKIIASNTLLAGEQARRNNKESEPRTKAIEYNVVPSQINNKEVEAENNNNNNNDTNVSDWKMALYHESPQQQQQSNSNSCGQKAMNCGNYRNHAFSMSLQDLIGIDSLGSSHQTTMLDHDSTTKLGTHFSDQSSLVANLSSTRECSSDKTCPTMFFPKPPIGSTKIVSPIATTGVSSWFPSPAISMSQLPVFAAWNDA* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0533 655 Gene3D AP2/ERF domain 393 453 IPR036955 GO:0003700|GO:0006355
Lan3g0533 655 Gene3D AP2/ERF domain 290 359 IPR036955 GO:0003700|GO:0006355
Lan3g0533 655 SMART rav1_2 393 457 IPR001471 GO:0003700|GO:0006355
Lan3g0533 655 SMART rav1_2 291 363 IPR001471 GO:0003700|GO:0006355
Lan3g0533 655 ProSiteProfiles AP2/ERF domain profile. 393 451 IPR001471 GO:0003700|GO:0006355
Lan3g0533 655 SUPERFAMILY DNA-binding domain 392 453 IPR016177 GO:0003677
Lan3g0533 655 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 44 653 - -
Lan3g0533 655 CDD AP2 290 358 IPR001471 GO:0003700|GO:0006355
Lan3g0533 655 SUPERFAMILY DNA-binding domain 290 359 IPR016177 GO:0003677
Lan3g0533 655 Pfam AP2 domain 291 349 IPR001471 GO:0003700|GO:0006355
Lan3g0533 655 Pfam AP2 domain 393 443 IPR001471 GO:0003700|GO:0006355
Lan3g0533 655 ProSiteProfiles AP2/ERF domain profile. 291 357 IPR001471 GO:0003700|GO:0006355
Lan3g0533 655 CDD AP2 392 453 IPR001471 GO:0003700|GO:0006355
Lan3g0533 655 PRINTS Ethylene responsive element binding protein signature 292 303 IPR001471 GO:0003700|GO:0006355
Lan3g0533 655 PRINTS Ethylene responsive element binding protein signature 433 453 IPR001471 GO:0003700|GO:0006355
Lan3g0533 655 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 44 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0533 Lan-Chr3 5388214 5391881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0533 75 500 AP2-EREBP Transcription Factor Family AT4G37750 53.291 1.17e-146 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Lan3g0533 AP2 2.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0533 K09285 - gmx:100798179 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g0533 3 5388214 5391881 Lan14g0867 14 15331817 15336099 PCT
Lan3g0533 3 5388214 5391881 Lan3g1166 3 23915652 23920189 PCT
Lan14g0867 14 15331817 15336099 Lan3g0533 3 5388214 5391881 PCT
Lan3g1166 3 23915652 23920189 Lan3g0533 3 5388214 5391881 PCT