Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0701 ATGATGGAGGAATATACTCATACTAGTAATCACATGAGTGAAAATACAGGTCCGAGTTCAAGTCCAAGGCCAAATTTCTTGTACTCTTCTTTGGCTAGTGGTTCAACCCTTGAAAATCATCCTCATCGGTATCCAATCAACAACTTTCATTTTCAATCTGATGGTGGATCAGATCATCATCATCATGGTTTTCCATCTGATCAAGTACCACCACACTCTGATGTGAAAAGTGAAGCTCCTAATACTACTACATCTCAGCTTTTCTCTCCGATTTTCCACTATCCTTTGATGAGAGGAAATTTTCACAAAAACACTATGCAGCAGTATCAAGGAGGGAGCCAAAGTTTTAATGAAGTTGAACACATAAAAGCTAAAATTATTGCTCATCCTCAGTACTCCAATCTCATTGAAGCTTACATTGATTGTCAAAAGGTTGGAGCTTCTTCGGAAGTGGTGGCCCGTCTGGTTGAGGCAAGGCACGAGTTTGAGGCACGGCAAAGATCTTCAGTTAACTCAAGGGAAAATTCAAAGGACCTAGAACTTGACCAATTTATTGAAGCATATTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCAGTACAAGAGGCAATGAATTTCATGAGGAAGATAGAAAATCAGCTAAATATGCTTTGCAATGGACCTGTGTGGATCTTCTCTGGGGAGGGGAAGGTGACCCAGATTAGACAAGATGTTATTTCAATATTTCATCAAGCACAGAACCCTAGTCACGAGCCTTTAGAATATCACAATACATTTTCAGATAAATATGAAGGTGTTGGTTCATCGGAAGAGGATGAAGACAATAATAGTGGTGGAGAAACAGAATTGCCCGAGTTTGATCCCAGATCAGAAGATCGTGAACTTAAAAAACACTTGCTGAAGAAGTATAGTGGTTACTTGAGTAGCCTTAAGCAAGAACTTTCAAAGAAAAAGAAGAAGGGAAAGCTTCCTAAAGATGCTAGGCAGAAGCTACTTAATTGGTGGGAATTGCATTACAAATGGCCGTATCCTTCGGAATCAGAGAAGGTGGCACTGTCAGAGTCAACTGGTTTGGACCATAAGCAAATAAATAATTGGTTCATAAACCAAAGGAAGAGGCACTGGAAACCCTCTGAAGATATGCAATTTATGGTAATGGATGGCCTGAATCCCCAGAATGGCACAACTCTTTATATGGATGGTGCATACATGGGTGATGGACACTATCGTCTAGCACCATGA 1251 0.4013 MMEEYTHTSNHMSENTGPSSSPRPNFLYSSLASGSTLENHPHRYPINNFHFQSDGGSDHHHHGFPSDQVPPHSDVKSEAPNTTTSQLFSPIFHYPLMRGNFHKNTMQQYQGGSQSFNEVEHIKAKIIAHPQYSNLIEAYIDCQKVGASSEVVARLVEARHEFEARQRSSVNSRENSKDLELDQFIEAYYDMLVKYREELTRPVQEAMNFMRKIENQLNMLCNGPVWIFSGEGKVTQIRQDVISIFHQAQNPSHEPLEYHNTFSDKYEGVGSSEEDEDNNSGGETELPEFDPRSEDRELKKHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALSESTGLDHKQINNWFINQRKRHWKPSEDMQFMVMDGLNPQNGTTLYMDGAYMGDGHYRLAP 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0701 416 SMART KNOX1_2 120 164 IPR005540 GO:0003677|GO:0005634
Lal8g0701 416 SMART KNOX2_2 171 222 IPR005541 GO:0003677|GO:0005634
Lal8g0701 416 ProSitePatterns 'Homeobox' domain signature. 355 378 IPR017970 GO:0000981|GO:0006355
Lal8g0701 416 SUPERFAMILY Homeodomain-like 318 391 IPR009057 -
Lal8g0701 416 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 263 408 - -
Lal8g0701 416 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 235 - -
Lal8g0701 416 MobiDBLite consensus disorder prediction 1 82 - -
Lal8g0701 416 ProSiteProfiles ELK domain profile. 297 317 IPR005539 GO:0003677
Lal8g0701 416 Pfam Homeobox KN domain 337 376 IPR008422 GO:0003677|GO:0006355
Lal8g0701 416 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 263 408 - -
Lal8g0701 416 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 2 235 - -
Lal8g0701 416 Pfam KNOX2 domain 176 221 IPR005541 GO:0003677|GO:0005634
Lal8g0701 416 Pfam KNOX1 domain 122 163 IPR005540 GO:0003677|GO:0005634
Lal8g0701 416 SMART HOX_1 319 384 IPR001356 GO:0003677
Lal8g0701 416 Pfam ELK domain 297 318 IPR005539 GO:0003677
Lal8g0701 416 CDD homeodomain 329 381 IPR001356 GO:0003677
Lal8g0701 416 ProSiteProfiles 'Homeobox' domain profile. 317 380 IPR001356 GO:0003677
Lal8g0701 416 SMART ELK_2 297 318 IPR005539 GO:0003677
Lal8g0701 416 Gene3D - 322 384 - -
Lal8g0701 416 MobiDBLite consensus disorder prediction 253 294 - -
Lal8g0701 416 MobiDBLite consensus disorder prediction 6 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0701 Lal-Chr8 4975164 4979638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0701 64 416 Homeobox Transcription Factor Family AT4G08150 60.056 4.07e-134 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lal8g0701 KNOX2 6.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0701 - - gmx:100800822 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0701 8 4975164 4979638 Lal8g0701 8 4975164 4979638 ECH
Lal8g0701 8 4975164 4979638 Lal10g0752 10 15207209 15213190 LSH