LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal8g0681	ATGGCATTTGCAGGAACAACCCAAAAATGTATGGCTTGTGACAAAACAGTTTATCTGGTTGAGAAGTTGACTGCAGATAACAGAGTGTACCACAAAGCTTGCTTCAAGTGCCACCACTGCAAAGGAACTCTTAAGCTTGGCAATTACAACTCTTTTGAGGGAGTTCTTTACTGCAGGCCACACTATGACCAAACACTCAAAAGAACTGGTACCCTTGACAAGAGCTTTGAAGGGACACCAAAAGTGGCCAGGCCAGAAAAAACCAGTGACAACATTAAGAAACCTGCATCAGTCAAAGTCTCAAGTATGTTTGGTGGAACAAGGGAAAAATGTTCTGGTTGCCAGAAAACTGTGTATCCCACTGAGAAGGTTACAGTGAATGGAACTCCTTACCATAAGATTTGTTTCAAATGCAGCCATGGAGGGTGTGTTATAAGTCCTTCCAACTACATTGCCCATGAGGGAAAACTCTACTGCAAACACCACCATATTCAACTCATCAAGGCGAAGGGAAATTTAAGCAATCTTGAAGGTGACAAAGAGAAGAATGCAGTGCAGGAGAAAATCAATGCTTAA	576	0.4219	MAFAGTTQKCMACDKTVYLVEKLTADNRVYHKACFKCHHCKGTLKLGNYNSFEGVLYCRPHYDQTLKRTGTLDKSFEGTPKVARPEKTSDNIKKPASVKVSSMFGGTREKCSGCQKTVYPTEKVTVNGTPYHKICFKCSHGGCVISPSNYIAHEGKLYCKHHHIQLIKAKGNLSNLEGDKEKNAVQEKINA	191

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal8g0681	191	Gene3D	Cysteine Rich Protein	4	74	-	-
	Lal8g0681	191	Gene3D	Cysteine Rich Protein	106	175	-	-
	Lal8g0681	191	CDD	LIM2_SF3	111	171	-	-
	Lal8g0681	191	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	36	76	-	-
	Lal8g0681	191	PANTHER	LIM DOMAIN-CONTAINING PROTEIN WLIM1-LIKE	1	185	-	-
	Lal8g0681	191	ProSiteProfiles	LIM domain profile.	109	169	IPR001781	-
	Lal8g0681	191	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	103	136	-	-
	Lal8g0681	191	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	3	35	-	-
	Lal8g0681	191	Pfam	LIM domain	10	64	IPR001781	-
	Lal8g0681	191	Pfam	LIM domain	111	165	IPR001781	-
	Lal8g0681	191	ProSitePatterns	LIM zinc-binding domain signature.	10	44	IPR001781	-
	Lal8g0681	191	PANTHER	OS06G0237300 PROTEIN	1	185	IPR045268	GO:0051015
	Lal8g0681	191	SMART	lim_4	110	162	IPR001781	-
	Lal8g0681	191	SMART	lim_4	9	61	IPR001781	-
	Lal8g0681	191	ProSiteProfiles	LIM domain profile.	8	68	IPR001781	-
	Lal8g0681	191	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	137	176	-	-
	Lal8g0681	191	CDD	LIM1_SF3	6	68	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal8g0681	Lal-Chr8	4803381	4805266	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LIM	Lal8g0681		LIM	2e-12	CL0167

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal8g0681	8	4803381	4805266	Lal8g0681	8	4803381	4805266	ECH
	Lal8g0681	8	4803381	4805266	Lal25g0611	25	4623959	4626676	LSH
	Lal8g0681	8	4803381	4805266	Lal10g0772	10	15452547	15455051	LSH