Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0670 ATGGCTTTAGAAGCAATGAATTCACCCACAACCGCTACTCCTTCCTTCACTTTTGACACCAAAAACCATCATTCTCTTAATGAGTCATGGACTAAAGGAAAACGTTCCAAGCGTCCCCGCCTCGACAACAACCACCACCACCCTTCTTGTACTGAAGAAGAGTACCTTGCTTACTGCCTCATCATGCTCGCTAGCGGCGGCGCTACCACTCCTCCGCCTCTAGGGCCAACTGCCAAGCCCAGTTTCAAATGCTCTGTATGTCATAAATTATTCCCTTCTTATCAAGCACTTGGTGGACACAAGGCCAGTCACCGGAAACTCTCCGGCAGTGAATCATCATCTTCAGCAGCCACAACTAATTCTGCCAACACCACCACCACCGCCGTATCTAACGGTGGTGGTAAGGTTCATGAGTGTTCCATCTGCCATAAATCGTTCCCCACCGGTCAGGCCTTGGGCGGACACAAGCGTCGCCACTATGAAGGCGGTAATGGTGGTAACAACAGTACTACCACCATTACCGCTTCCGAAGGTGTGGGGTCCACCCACACCATAAGTCATGGTCATCATCGTAACTTTGATCTCAATATTCCTGCTTTGCCAGAGTTTTCAATTTCAACAATGGTTGGAGAAGATGAAGTTGAGAGTCCTCTGCCTTTGATGAAGAAGCCTCGTCTTTTCATGATACCTAACATCCAGATTCCTCAACATTGA 714 0.4846 MALEAMNSPTTATPSFTFDTKNHHSLNESWTKGKRSKRPRLDNNHHHPSCTEEEYLAYCLIMLASGGATTPPPLGPTAKPSFKCSVCHKLFPSYQALGGHKASHRKLSGSESSSSAATTNSANTTTTAVSNGGGKVHECSICHKSFPTGQALGGHKRRHYEGGNGGNNSTTTITASEGVGSTHTISHGHHRNFDLNIPALPEFSISTMVGEDEVESPLPLMKKPRLFMIPNIQIPQH 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0670 237 MobiDBLite consensus disorder prediction 151 171 - -
Lal8g0670 237 SUPERFAMILY beta-beta-alpha zinc fingers 82 159 IPR036236 -
Lal8g0670 237 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 229 IPR044653 GO:0003700
Lal8g0670 237 ProSiteProfiles Zinc finger C2H2 type domain profile. 137 159 IPR013087 -
Lal8g0670 237 Pfam C2H2-type zinc finger 82 106 - -
Lal8g0670 237 Pfam C2H2-type zinc finger 136 160 - -
Lal8g0670 237 ProSitePatterns Zinc finger C2H2 type domain signature. 139 159 IPR013087 -
Lal8g0670 237 SMART c2h2final6 137 159 IPR013087 -
Lal8g0670 237 SMART c2h2final6 82 104 IPR013087 -
Lal8g0670 237 MobiDBLite consensus disorder prediction 1 24 - -
Lal8g0670 237 MobiDBLite consensus disorder prediction 1 46 - -
Lal8g0670 237 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Lal8g0670 237 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 104 IPR013087 -
Lal8g0670 237 PANTHER ZINC FINGER PROTEIN ZAT10 1 229 - -
Lal8g0670 237 MobiDBLite consensus disorder prediction 102 133 - -
Lal8g0670 237 MobiDBLite consensus disorder prediction 108 133 - -
Lal8g0670 237 MobiDBLite consensus disorder prediction 25 46 - -
Lal8g0670 237 Gene3D Classic Zinc Finger 78 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0670 Lal-Chr8 4729651 4730364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0670 1 234 C2H2 Transcription Factor Family AT1G27730 54.430 1.86e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal8g0670 zf-C2H2_6 6.4e-13 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0670 8 4729651 4730364 Lal13g0374 13 2356665 2357450 ECH
Lal8g0670 8 4729651 4730364 Lal12g0385 12 2734151 2734906 ECH
Lal8g0670 8 4729651 4730364 Lal8g0670 8 4729651 4730364 ECH
Lal8g0670 8 4729651 4730364 Lal21g0232 21 1532552 1533301 PCT
Lal21g0232 21 1532552 1533301 Lal8g0670 8 4729651 4730364 PCT