Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0698 ATGTTCTTTTCACGGCATCTCACCGACACCACCTCCGCCGCCGCCGCCGCATCCGCAACCTCTTTCCGGTTCCCGTCTTCCGCTTCATCTGACGTTGACATTACTCCTCCTGGCGTTCCTTCTAGAATCTCTTCCTCTACCTCTCACTTGTTTTCTCAACCTTCTTCTTGGTTCTCTTCTCCCTCTCTTGACCTCAAACGCTCTTCTTCTCAAGCACTCTACCATCCAACCGTTTTGGGTATCCAAAACACAATTGGGCAAAATGAAGCTTGGTATTCTACAAGCCCTCTAGCCAAACGCCCTAGATATGAAAGTGGAAGCAATTTGCCTATATATCCACAAAGGCCAGGAGAGAAGGATTGTGCCCACTATATGCTCACAAGAACCTGTAAGTTTGGAGAGAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCAGATTGGAAAGAGGTTCCAGATGTTACAAATGAAACTCTTCCCGAGAGACCAGGAGAACCAGATTGTCCATACTTTGTTAAAACTCAGAGATGCAAGTTTGGTCCAAGGTGCAAGTTTAATCATCCAAAGGTTTCCTCTGAAAGTGCTAGTTTTTCTGGCTTACCTGAGAGGCCGTCAGAGCCCCCGTGTGCGTTCTATGTGAAAACTGGAAGATGTAAATTCGGTGCTGCGTGTAAATTCGATCACCCGAAAGATATCCAGATTCAGCTGTCAGATGAACTGAGTCATACTGCCGAACAGACACAAACAAGTTTTATGATGGAGGGGGCAACAGTAGATACGCAAACAATTAAACCTCTTATATCTCCACTATTACAAAATAGTAAAGGGCTTCCTGGGGAAGTGGATTGTCCATTCTACATGAAAACTGGCAGTTGCAAGTATGGTACTTCTTGCCGCTACAATCATCCTGACAGGACTGCATTTAATCTGCCTATTGCTGCATTAGGCCCTTCTGTCTTGGCATCCTCGGCTGCAAATCTGAATATTGGAGTTATAAATCCTGCTGCACCTGTTTATCAAGCCTTTGACCCGAGGTTGTCAAACCCAATGTCTCAGCTGGGAATGACAGAAACTATCTATCCTCAGCGACCCGGACAGATTGAATGTGATTACTATATGAAAACTGGCATATGTAAATTTGGGGAAAGGTGCAAGTTTCATCACCCAATTGACCACTCAGCACCATCACAACAAACCGTTAAGCTCACTCCTGCAGGATTACCTAGGAGAGAGGGTGCTATGATTTGTCCATATTATTTGAAAACTGGCACATGCAAGTATGGTGCAACCTGCAAGTTTGACCACCCACCACCTGGAGAAGTTATGGAGATGGCAAAATCGCAAATCAATGGAGGGGAAGCCAAAGACAATGAAAATGTATCTGCTTCTGCTTAG 1407 0.4534 MFFSRHLTDTTSAAAAASATSFRFPSSASSDVDITPPGVPSRISSSTSHLFSQPSSWFSSPSLDLKRSSSQALYHPTVLGIQNTIGQNEAWYSTSPLAKRPRYESGSNLPIYPQRPGEKDCAHYMLTRTCKFGESCKFDHPIWVPEGGIPDWKEVPDVTNETLPERPGEPDCPYFVKTQRCKFGPRCKFNHPKVSSESASFSGLPERPSEPPCAFYVKTGRCKFGAACKFDHPKDIQIQLSDELSHTAEQTQTSFMMEGATVDTQTIKPLISPLLQNSKGLPGEVDCPFYMKTGSCKYGTSCRYNHPDRTAFNLPIAALGPSVLASSAANLNIGVINPAAPVYQAFDPRLSNPMSQLGMTETIYPQRPGQIECDYYMKTGICKFGERCKFHHPIDHSAPSQQTVKLTPAGLPRREGAMICPYYLKTGTCKYGATCKFDHPPPGEVMEMAKSQINGGEAKDNENVSASA 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0698 468 SUPERFAMILY CCCH zinc finger 116 142 IPR036855 GO:0046872
Lal2g0698 468 SUPERFAMILY CCCH zinc finger 286 308 IPR036855 GO:0046872
Lal2g0698 468 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 283 307 IPR000571 GO:0046872
Lal2g0698 468 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 210 234 IPR000571 GO:0046872
Lal2g0698 468 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 168 193 IPR000571 GO:0046872
Lal2g0698 468 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 370 393 IPR000571 GO:0046872
Lal2g0698 468 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 419 441 IPR000571 GO:0046872
Lal2g0698 468 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 117 141 IPR000571 GO:0046872
Lal2g0698 468 ProSiteProfiles Zinc finger C3H1-type profile. 414 442 IPR000571 GO:0046872
Lal2g0698 468 SUPERFAMILY CCCH zinc finger 171 192 IPR036855 GO:0046872
Lal2g0698 468 SMART c3hfinal6 166 193 IPR000571 GO:0046872
Lal2g0698 468 SMART c3hfinal6 207 234 IPR000571 GO:0046872
Lal2g0698 468 SMART c3hfinal6 367 394 IPR000571 GO:0046872
Lal2g0698 468 SMART c3hfinal6 115 142 IPR000571 GO:0046872
Lal2g0698 468 SMART c3hfinal6 281 308 IPR000571 GO:0046872
Lal2g0698 468 SMART c3hfinal6 414 441 IPR000571 GO:0046872
Lal2g0698 468 ProSiteProfiles Zinc finger C3H1-type profile. 166 194 IPR000571 GO:0046872
Lal2g0698 468 SUPERFAMILY CCCH zinc finger 211 235 IPR036855 GO:0046872
Lal2g0698 468 Gene3D - 114 204 - -
Lal2g0698 468 Gene3D - 205 315 - -
Lal2g0698 468 Gene3D - 365 459 - -
Lal2g0698 468 ProSiteProfiles Zinc finger C3H1-type profile. 207 235 IPR000571 GO:0046872
Lal2g0698 468 ProSiteProfiles Zinc finger C3H1-type profile. 115 143 IPR000571 GO:0046872
Lal2g0698 468 ProSiteProfiles Zinc finger C3H1-type profile. 367 395 IPR000571 GO:0046872
Lal2g0698 468 SUPERFAMILY CCCH zinc finger 369 395 IPR036855 GO:0046872
Lal2g0698 468 SUPERFAMILY CCCH zinc finger 418 441 IPR036855 GO:0046872
Lal2g0698 468 ProSiteProfiles Zinc finger C3H1-type profile. 281 309 IPR000571 GO:0046872
Lal2g0698 468 PANTHER CCCH ZINC FINGER/TIS11-RELATED 65 456 IPR045877 GO:0003729
Lal2g0698 468 MobiDBLite consensus disorder prediction 25 56 - -
Lal2g0698 468 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 65 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0698 Lal-Chr2 4266290 4275220 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0698 282 442 C2H2 Transcription Factor Family AT3G02830 36.025 3.80e-28 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal2g0698 zf-CCCH 5.8e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0698 - - lang:109352000 879.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0698 2 4266290 4275220 Lal2g0698 2 4266290 4275220 ECH